View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9979_low_1 (Length: 484)
Name: NF9979_low_1
Description: NF9979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9979_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 17 - 476
Target Start/End: Original strand, 48894480 - 48894935
Alignment:
| Q |
17 |
aggaagtagcaactaccttggcttgaatggcttctgtatagtcaagaacgacatcgagcaaggagccagaaaagtgaggaatggaagcataatgttgatg |
116 |
Q |
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| T |
48894480 |
aggaagtagcaactaccttggcttgaatggcttctgtatagtcaagaacgacatcgagcaaggagccagaaaagtgaggaatggaagcataatgttgatg |
48894579 |
T |
|
| Q |
117 |
gtaggtgggagaattaagtgggaatcttgctctctcaatcacactaaatatgattgtatcctcttgtctaattaaagatgctctcactgattctactgtg |
216 |
Q |
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| T |
48894580 |
gtaggtgggagaattaagtgggaatcttgctctctcaatcacactaaatatgattgtatcctcttgtctaattaaagatgctctcactgattcaactgtg |
48894679 |
T |
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| Q |
217 |
tattcattctctgaaccctttgcagttgatttgtgtctctccgtacaacttaacagcataacaaccacagcaataaatcgaagcttcatcatgtggttac |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
48894680 |
tattcattctctgaaccctttgcagttgatttgtgtctctccgtacaacttaacagcataacaaccacagccataaatcgaagcttcatcatgtggttac |
48894779 |
T |
|
| Q |
317 |
tgttgttgacacaacaatttctgcaagctgaaacagaaatggttggaaagtaatgtcaattaaggtcttgcgtatgtatgtatgtatgtacgcctttctt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
48894780 |
tgttgttgacacaacaatttctgcaagctgaaacagaaatggttggaaagtaatgtcaattaaggtctggc----gtatgtatgtatgtacgcctttctt |
48894875 |
T |
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| Q |
417 |
tatcaagaggcatggtgaattaatcacgggccgttttggccgcacaaacattactcctat |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48894876 |
tatcaagaggcatggtgaattaatcacgggccgttttggccgcacaaacattactcctat |
48894935 |
T |
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