View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9979_low_15 (Length: 250)
Name: NF9979_low_15
Description: NF9979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9979_low_15 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 39921156 - 39921392
Alignment:
| Q |
14 |
agaattccaggtggcaacaaacaatggaactccttgagagcatccatggcattagacagaggtacaacatttcagttctaccaaacaataaatcagaccg |
113 |
Q |
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| T |
39921156 |
agaattccaggtggcaacaaacaatggaactccttgagagcatccatggcattagacagaggtacaacatttcagttctaccaaacaataaatcagaccg |
39921255 |
T |
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| Q |
114 |
tttcatttgaagatttaaatatgaaaactaattttgattaggtgtttcttagttgttttgattttagataatttttaagagtattcatataagaggcgga |
213 |
Q |
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| T |
39921256 |
tttcatttgaagatttaaatatgaaaactaattttgattaggtgtttcttagttgttttgattttagataatttttaagagtattcatataagaggcgga |
39921355 |
T |
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| Q |
214 |
aagtaacgcatgacttttctcaaattttctaactcgc |
250 |
Q |
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| T |
39921356 |
aagtaacgcatgacttttctcaaattttctaactcgc |
39921392 |
T |
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