View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9979_low_16 (Length: 248)
Name: NF9979_low_16
Description: NF9979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9979_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 11469099 - 11468875
Alignment:
| Q |
9 |
gtatcacattttcaatggtcaaactttgcaaacattcaaaaaagatcaaatatagtaa----gggcatgtgcctaatgtctctacacagttttaannnnn |
104 |
Q |
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| T |
11469099 |
gtatcacattttcaatggtcaaactt-gcatacattcaaaaaagatcaaatatagtaattaagggcatgtgcctaatgtctctacacagttttaattttt |
11469001 |
T |
|
| Q |
105 |
nnnaagtaataatgcttcaagagttcacctcgtgttaattgagacctcaaaacaaagacataaaattaggcaatatctgttctttgtcctggattttgaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
11469000 |
t--aagtaataatgcttcaagagttcacctcgtgttaattgagacctcaaaacaa-gacataaaataaggcaatatctgttctgtgtcctggattttgaa |
11468904 |
T |
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| Q |
205 |
atgtatatataagttgcaaacttgtttat |
233 |
Q |
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| T |
11468903 |
atgtatatataagttgcaaacttgtttat |
11468875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 11522362 - 11522586
Alignment:
| Q |
9 |
gtatcacattttcaatggtcaaactttgcaaacattcaaaaaagatcaaatatagtaa----gggcatgtgcctaatgtctctacacagttttaannnnn |
104 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11522362 |
gtatcacattttcaatggtcaaactt-gcatacattcaaaaaagatcaaatatagtaattaagggcatgtgcctaatgtctctacacagttttaattttt |
11522460 |
T |
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| Q |
105 |
nnnaagtaataatgcttcaagagttcacctcgtgttaattgagacctcaaaacaaagacataaaattaggcaatatctgttctttgtcctggattttgaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
11522461 |
t--aagtaataatgcttcaagagttcacctcgtgttaattgagacctcaaaacaa-gacataaaataaggcaatatctgttctgtgtcctggattttgaa |
11522557 |
T |
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| Q |
205 |
atgtatatataagttgcaaacttgtttat |
233 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
11522558 |
atgtatatataagttgcaaacttgtttat |
11522586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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