View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9979_low_17 (Length: 241)
Name: NF9979_low_17
Description: NF9979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9979_low_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 39921782 - 39921559
Alignment:
| Q |
18 |
gtaaggtatcgagtatgccaaatctttgtatcaagtataaattgattatgtcaattcaaaaacgtgattggaatttatggcattgcaagaagcaaacata |
117 |
Q |
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| T |
39921782 |
gtaaggtatcgagtatgccaaatctttgtatcaagtataaattgattatgtcaattcaaaaacgtgattggaatttatggcattgcaagaagcaaacata |
39921683 |
T |
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| Q |
118 |
tgtgaaactcggaagccatatttacaaactctaataaagccatgctatttgaaggactgggccactaggagtaaatcaatacatatacacttgtttgcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39921682 |
tgtgaaactcggaagccatatttacaaactctaataaagccacgctatttgaaggactgggccactaggagtaaatcaatacatatacacttgtttgcat |
39921583 |
T |
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| Q |
218 |
tgtactcaaataacaataagcatc |
241 |
Q |
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||||||||| |||||||||||||| |
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| T |
39921582 |
tgtactcaactaacaataagcatc |
39921559 |
T |
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