View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9979_low_18 (Length: 239)
Name: NF9979_low_18
Description: NF9979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9979_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 48564737 - 48564517
Alignment:
| Q |
1 |
gacttaattttgaaggattaaagcatgcttgatatttttt-aataaccgtaaagaagaaaaagaaataatgtcataatgcattcaagttagaaaggattg |
99 |
Q |
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| T |
48564737 |
gacttaattttgaaggattaaagcatgcttgatatttttttaataaccgtaaa--agaaaaagaaataatgtcataatgcattcaagt-agaaaggattg |
48564641 |
T |
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| Q |
100 |
tcgtagcctgatggaaacatagattattgtctccaatccaaaatatggctttgcgttctcttggttgatccaaaaaagatatgaattcattttgaatgaa |
199 |
Q |
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| T |
48564640 |
tcgtagcctgatggaaacatagattattgtctccaatccaaaatatggctttgcgttctcttggttgatccaaaaaagatatgaattcattttgaatgaa |
48564541 |
T |
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| Q |
200 |
aacagttatcctttgcataaaaaa |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
48564540 |
aacagttatcctttgcataaaaaa |
48564517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 203
Target Start/End: Complemental strand, 48564476 - 48564413
Alignment:
| Q |
140 |
aaatatggctttgcgttctcttggttgatccaaaaaagatatgaattcattttgaatgaaaaca |
203 |
Q |
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|||||| ||||||| ||||||||||||||| | ||| ||||||||||| | ||||||||||||| |
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| T |
48564476 |
aaatatagctttgcattctcttggttgatctataaaggatatgaattcgtgttgaatgaaaaca |
48564413 |
T |
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