View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9979_low_2 (Length: 437)
Name: NF9979_low_2
Description: NF9979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9979_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 29364697 - 29364927
Alignment:
| Q |
20 |
gagacaatcttagaacaccacgtgtcatatcacgaaaaatttgaatgcctaaaacaactgaagcatcaccaaagtccttcatatcaaagtggctactcaa |
119 |
Q |
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| T |
29364697 |
gagacaatcttagaacaccacgtatcatatcacgaaaaatttgaatgcctaaaacaactgaagcatcaccaaggtccttcgtatcaaagtggctactcaa |
29364796 |
T |
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| Q |
120 |
catcggttttgtctcattaaaaaggttaatgcaactgctag---caaaaagaatacagttgac----atatagcacgagaattatgaagtttctcccact |
212 |
Q |
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| T |
29364797 |
catcagtcttgtctcattaaaaaggttaatgcaactgctagaaaaaaaaagaacaccgttgacatatatatagcacgaaaattatgaagtttctcccact |
29364896 |
T |
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| Q |
213 |
catgtttaaataaatgcactggtctgaagtg |
243 |
Q |
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| T |
29364897 |
tgtctttaaataaatgcactggtctgaagtg |
29364927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 301
Target Start/End: Original strand, 29364947 - 29364985
Alignment:
| Q |
263 |
aaagcaaaggaaatttttattagaataaattgcaaccca |
301 |
Q |
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| T |
29364947 |
aaaggaaaagaaatttttattagaataaattgcaaccca |
29364985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 309
Target Start/End: Original strand, 23714952 - 23714999
Alignment:
| Q |
261 |
aaaaagcaaaggaaatttttattagaataaattgcaacccagagcacaa |
309 |
Q |
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| T |
23714952 |
aaaaagcaaag-aaatttttattaaaatgaattgcaacccaaagcacaa |
23714999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 373
Target Start/End: Complemental strand, 41874091 - 41874059
Alignment:
| Q |
341 |
taggcttattagatacattggtccctcaattaa |
373 |
Q |
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| T |
41874091 |
taggcttattagatccattggtccctcaattaa |
41874059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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