View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9979_low_3 (Length: 382)
Name: NF9979_low_3
Description: NF9979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9979_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 182; Significance: 3e-98; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 82 - 279
Target Start/End: Original strand, 10408378 - 10408574
Alignment:
| Q |
82 |
aaaaatttaccatctagttttgatctatattggatggatgctagacttacacgaaaatttaccaactcaagagaccgacacgtctacatattggatgcaa |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10408378 |
aaaaatttaccatctagttttgatctatattggatg-atgtgagacttacacgaaaatttaccaactcaagagaccgacacgtctacatattggatgcaa |
10408476 |
T |
|
| Q |
182 |
catacataagccaaaatcttaaaatttgagagagaacatatatgattttttatcaaacacatctgccgtatagaaggaagagtaatggctttaattag |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10408477 |
catacataagccaaaatcttaaaatttgagagagaacatatatgattttttatcaaacacatctgccgtatagaaggaagagtaatggctttaattag |
10408574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 10408121 - 10408196
Alignment:
| Q |
12 |
agagagtcgcatgcaaacttaatgtccttgatgtacgaatgcatcttgcaacgtagaaatcgaccaactcaaaaat |
87 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10408121 |
agagagtcgcatgcaaacttaatgtctttgatgtacgaatgcatcttgcaacgtagaaatcgaccaactcaaaaat |
10408196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 298 - 366
Target Start/End: Original strand, 10408601 - 10408669
Alignment:
| Q |
298 |
aattagatgacccgtacacatttaaagtcaggttggaaaactatgatgatgtttctcgaatggaatttg |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10408601 |
aattagatgacccgtacacatttaaagtcaggttggaaaactatgatgatgtttctcgaatggaatttg |
10408669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University