View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9979_low_5 (Length: 338)
Name: NF9979_low_5
Description: NF9979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9979_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 316
Target Start/End: Original strand, 35739259 - 35739573
Alignment:
| Q |
7 |
tttcgtgttatggaatggaatgtataccca-ttgaagactattattagatatcatgtaagggtacaagatgcgctaatttaaagcaattaaggcatatat |
105 |
Q |
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| T |
35739259 |
tttcgtgttatggaatggaatgtatacccaattgaagactattattagatatcatgtaagggtacaaaatgcgctaatttaaagcaattaaggcatatat |
35739358 |
T |
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| Q |
106 |
gtgtatgtcaacaaaaaccatgagtcgtttttgtataacataataaatatgagagatctaaattgttaatctaaattcacaacaaaaaacatggatggtg |
205 |
Q |
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| T |
35739359 |
gtgtatgtcaacaaaaaccatgagtcgtttttgtataacataat-aatatgagagatctaaattgttaatctaaattcacaacaaaaaacatggatggtg |
35739457 |
T |
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| Q |
206 |
ttatttttcatgtgcttaaaaatgttaggta------------aaaatataacattaagaaataaggtaagaagcatatgtattcatgtttacctttata |
293 |
Q |
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| T |
35739458 |
ttatttttcatgtgcttaaaaatgttaggtaaaaataaaagtcaaaatataacattaagaaataaggttagaagca-------tcatgtttacctttata |
35739550 |
T |
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| Q |
294 |
atatgttcaaccaacctagctag |
316 |
Q |
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| T |
35739551 |
atatgttcaaccaacctagctag |
35739573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 307
Target Start/End: Original strand, 35748081 - 35748151
Alignment:
| Q |
237 |
aaaatataacattaagaaataaggtaagaagcatatgtattcatgtttacctttataatatgttcaaccaa |
307 |
Q |
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|||||| |||| |||||||||| |||||||| || ||| |||||||||||| ||||| | |||||||||| |
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| T |
35748081 |
aaaatacaacaagaagaaataagctaagaagcttaggtaatcatgtttacctgtataacaagttcaaccaa |
35748151 |
T |
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