View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9979_low_6 (Length: 331)
Name: NF9979_low_6
Description: NF9979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9979_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 35739548 - 35739795
Alignment:
| Q |
17 |
ataatatgttcaaacaacctagctagctaggagtacttttgacaaaactaaaaatatacaaaagt----tttcctttttcattcaaattcacgtcattca |
112 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35739548 |
ataatatgttcaaccaacctagctag----gagtacttttgagaaaactaaaaatatacaaaagtacgttttcctttttcattcaaattcacgtcattca |
35739643 |
T |
|
| Q |
113 |
aatccaaatactctaagcagctaaatgaattttatagcagcacaggaggaat----gataggatgccgtcaatggcattgcatggtaagtcactgattaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35739644 |
aatccaaatactctaagcagctaaatgaatttattagcagcacaggaggaatgaatgataggatgccgtcaatggcattgcatggtaagtcactgattaa |
35739743 |
T |
|
| Q |
209 |
tgcatgtgatcatcttgactagccctattgttgaaaataaagagtcataagg |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35739744 |
tgcatgtgatcatcttgactagccctattgttgaaaataaagagtcataagg |
35739795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 35742939 - 35742977
Alignment:
| Q |
168 |
aggatgccgtcaatggcattgcatggtaagtcactgatt |
206 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35742939 |
aggatgccgtcaatgacattgcatggtaagtcactgatt |
35742977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 314
Target Start/End: Original strand, 35743017 - 35743065
Alignment:
| Q |
266 |
gaactacaaatccaagcaagcaaaagtgtaaatattatgatcttacttc |
314 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||| ||||| ||||| |
|
|
| T |
35743017 |
gaactacaaattcaagcaagcagaagtgtaaatattacgatctgacttc |
35743065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 313
Target Start/End: Original strand, 35739796 - 35739826
Alignment:
| Q |
283 |
aagcaaaagtgtaaatattatgatcttactt |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
35739796 |
aagcaaaagtgtaaatattatgatcttactt |
35739826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University