View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9979_low_7 (Length: 315)
Name: NF9979_low_7
Description: NF9979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9979_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 39 - 185
Target Start/End: Original strand, 39844880 - 39845023
Alignment:
| Q |
39 |
tacggtaattcttgtcataaaagagatgatgactcattcaaactcatgagagg-ccaatgttttcaattgttgaacatgctcaattggtagggctagctg |
137 |
Q |
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| T |
39844880 |
tacggtcattctcgtcataaaagagatgatgactcattcaaactcataagaggcccaatgttttcaattgttgaacatgctcagttgggagg----gctg |
39844975 |
T |
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| Q |
138 |
gaggagaccaatcagaccctgtcatctctccatcgacatctacaacaa |
185 |
Q |
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| T |
39844976 |
ggggagaccaatcagaccctgtcatctctccgtcaacatcttcaacaa |
39845023 |
T |
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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 5171067 - 5170999
Alignment:
| Q |
225 |
tgaaaaatgaatagagatagtgatgtcaaaatattttgaggggtttgatgttttggagaaatccacccaag |
295 |
Q |
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| T |
5171067 |
tgaaagatgaatagagatagtgatgtaaaaatattttta--gatttgatgttttggagaaatccacccaag |
5170999 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 8552429 - 8552482
Alignment:
| Q |
231 |
atgaatagagatagtgatgtcaaaatattttgaggggtttgatgttttggagaaat |
286 |
Q |
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| T |
8552429 |
atgaatagagatagtgatgtcaaaacattttca--ggtttgatgttttggagaaat |
8552482 |
T |
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