View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9979_low_9 (Length: 304)

Name: NF9979_low_9
Description: NF9979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9979_low_9
NF9979_low_9
[»] chr3 (1 HSPs)
chr3 (18-299)||(54535614-54535911)


Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 54535614 - 54535911
Alignment:
Q  18 cctagtttgaattttgaagaatcaaaattgaagtattatgtgtaagtgtttagatatatcaata------cagacatttaaacaaagggggacacttggg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||| ||||||||||||    
T  54535614 cctagtttgaattttgaagaatcaaaattgaagtattatgtgtaagtgtttagatatatcaatatcaatacagacatttaaacaaagtgggacacttggg 54535713  T
Q  112 tcttcaaactt----------gacatgtagttagatcatagtaattgactacatataatttttgttttgagtgatgctatattatcaagcgaatgagtaa 201  Q
    |||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54535714 tcttcaaactttcagtatcatgacatgtagttagatcatagtaattgactacatataatttttgttttgagtgatgctatattatcaagcgaatgagtaa 54535813  T
Q  202 ttcgagagagacttgctatgtgtacagcgaagcatgacatggcaaaataattttgtccacgttttaattccagatttatagaaaatcacgtaggatct 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54535814 ttcgagagagacttgctatgtgtacagcgaagcatgacatggcaaaataattttgtccacgttttaattccagatttatagaaaatcacgtaggatct 54535911  T

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