View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9980_high_1 (Length: 614)
Name: NF9980_high_1
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9980_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 16 - 604
Target Start/End: Original strand, 2928588 - 2929180
Alignment:
| Q |
16 |
caacataaaccaataagtctctattatcattcattagctgaaattagcaagtggcctccgagacctatacatattaaatcctagagttaaattacggtcc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
2928588 |
caacataaaccaataagtctctattatcattcattagctgaaattagcaagtggcctccgagaccta------------cctagaattaaattacggtcc |
2928675 |
T |
|
| Q |
116 |
acaactgcaagtgcggtcataat---------------tttttacaaaaacatcacaaccgcaattgactacatttacctgcattttagtataatgtcaa |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2928676 |
acaactgcaagtgcggtcataatataaaatattataattttttacaaaaacatcacaaccgcaattgactacatttacctgcattttagtataatgtcaa |
2928775 |
T |
|
| Q |
201 |
gagtcacgatgaatccgcaatcgcggccacaatttaaaaccaggtagtagtttactataaaaacaaagagttagacaaaacaaa-gtcataaaatacctc |
299 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2928776 |
gagtcacaatgaattcgcaatcgcggccacaatttaaaaccaggtagtagtttactataaaaacaaagagttagacaaaacaaaagtcataaaatacctc |
2928875 |
T |
|
| Q |
300 |
atgtgcaattatagttgctttctctgcatcacttggaaaatgcctaatcaaatcccagcttagaactatcttcccattgggaaaacatccgacagacata |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2928876 |
atgtgcaattatagttgctttctctgcatcacttggaaaatgcctaatcaaatcccagcttagaactatcttcccattgggaaaacatccgacagacata |
2928975 |
T |
|
| Q |
400 |
ttagttnnnnnnnctaccaaaacctcccaatttaatccatccaaatgtgaaatggtacactcagattcatggctcattttgtttctctctctcagcaatg |
499 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2928976 |
ttagttaaaaaaactaccaaaacctcccaatttaatccatccaaatgtgaaatggtacactcagattcatggctcattttgtttctctctctcagcaatg |
2929075 |
T |
|
| Q |
500 |
catcaataatattgttgagaatctttgtaagccttacactttcttgatgggttggaggcattgtacgtccttcaaacctttgtttgtattcttcaaagcc |
599 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2929076 |
catcaataatattattgagaatctttgtaagccttacactttcttgatgggttggaggcattgtacgtccttcaaacctttgtttgtattcttcaaagcc |
2929175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 75 - 601
Target Start/End: Complemental strand, 2310397 - 2309867
Alignment:
| Q |
75 |
gagacctatacatattaaatcctagagttaaattacggtccacaactgcaagtgcggtcataat----------tttttacaaaaacatcacaaccgcaa |
164 |
Q |
| |
|
||||||||| ||||||||||| |||| ||||||| ||||||||||||| || ||| |||| ||| ||| ||||||||| |||||||||||| |
|
|
| T |
2310397 |
gagacctatccatattaaatcatagaattaaattgcggtccacaactggaaatgcagtcacaatatattaaaattttctacaaaaacgtcacaaccgcaa |
2310298 |
T |
|
| Q |
165 |
ttgactacatttacctgcattttagtataatgtcaagagtcacgatgaatccgcaatcgcggccacaatttaaaaccaggtagtagtttactataaaaac |
264 |
Q |
| |
|
||||||||||||||||| |||||||| |||| |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2310297 |
ttgactacatttacctgaattttagtgtaatatcaagagttacaatgaatccgcaatcgcggccgcaatttaaaaccaggtagtagtttactataaaaac |
2310198 |
T |
|
| Q |
265 |
aaagagttagacaaaacaaagtcataaaatacctcatgtgcaattatagttgctttctctgcatcacttggaaaatgcctaatcaaatcccagcttagaa |
364 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || ||| |||||||||||||||| |
|
|
| T |
2310197 |
aaagagttagacaaaacaaaatcataaaatacctcacgtgcaattaaggttgctttctctgcatcacttggaaaaggcttaaccaaatcccagcttagac |
2310098 |
T |
|
| Q |
365 |
ctatcttcccattgggaaaacatccgacagacatattagttnnnnnnnctaccaaaacctcccaatttaatccatccaaatgtgaaatggtacactcaga |
464 |
Q |
| |
|
||||||||||||| | ||||||| | |||| |||| || | |||||| |||||||||||||||||||||||||||||| || | ||| |
|
|
| T |
2310097 |
ctatcttcccattagcaaaacatgtgccagatatataaggtaaaaaaactaccacaacctcccaatttaatccatccaaatgtgacat------attaga |
2310004 |
T |
|
| Q |
465 |
ttcatggctcattttgtttctctctctcagcaatgcatcaataatattgttgagaatctttgtaagccttacactttcttgatgggttggaggcattgta |
564 |
Q |
| |
|
|||| |||||||||| ||||| ||||| ||||||||||||| ||||| ||||||||||||||| |||||||||||||||||| |||| ||||||||||| |
|
|
| T |
2310003 |
ttcagggctcattttctttctttctctttgcaatgcatcaattatattattgagaatctttgtatgccttacactttcttgataggtttgaggcattgta |
2309904 |
T |
|
| Q |
565 |
cgtccttcaaacctttgtttgtattcttcaaagccct |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2309903 |
cgtccttcaaacctttgtttgtattcttcaaagccct |
2309867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 291 - 333
Target Start/End: Original strand, 21959878 - 21959920
Alignment:
| Q |
291 |
aaatacctcatgtgcaattatagttgctttctctgcatcactt |
333 |
Q |
| |
|
||||||||||||| |||| ||||||||| |||||||||||||| |
|
|
| T |
21959878 |
aaatacctcatgtccaataatagttgctatctctgcatcactt |
21959920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 291 - 333
Target Start/End: Complemental strand, 904889 - 904847
Alignment:
| Q |
291 |
aaatacctcatgtgcaattatagttgctttctctgcatcactt |
333 |
Q |
| |
|
||||||||||||| |||| ||||||||| |||||||||||||| |
|
|
| T |
904889 |
aaatacctcatgtccaataatagttgctatctctgcatcactt |
904847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University