View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9980_high_13 (Length: 374)
Name: NF9980_high_13
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9980_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 20 - 346
Target Start/End: Original strand, 37469631 - 37469957
Alignment:
| Q |
20 |
aggtggctcatagagttgttgggtaccttgaagaagaagctatacattcttacactgagtatttgaaggacattgatagtggtgcaattgaaaatgttcc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37469631 |
aggtggctcatagagttgttgggtaccttgaagaagaagctatacattcttacactgagtatttgaaggacattgatagtggtgcaattgaaaatgttcc |
37469730 |
T |
|
| Q |
120 |
tgctcctgccattgcaatagactattggaggcttcccaaggatgccaaattgaaagatgttataacagtcattcgtgctgacgaggctcaccatcgggat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37469731 |
tgctcctgccattgcaatagactattggaggcttcccaaggatgccaaattgaaagatgttataacagtcattcgtgctgacgaggctcaccatcgggat |
37469830 |
T |
|
| Q |
220 |
gtgaaccatttcgcttcagtgagtgttctttatcacttgtataattatatatttttcttcacaaaactatgcgtattctaccaacttatcatcttaaatt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37469831 |
gtgaaccatttcgcttcagtgagtgttctttatcacttgtataattatatatttttcttcacaaaactatgcttattctaccaacttatcatcttaaatt |
37469930 |
T |
|
| Q |
320 |
tgtttacggtatatttgtttctgtgct |
346 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
37469931 |
tgtttacggtatatttgtttctgtgct |
37469957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 107 - 245
Target Start/End: Complemental strand, 29931688 - 29931550
Alignment:
| Q |
107 |
ttgaaaatgttcctgctcctgccattgcaatagactattggaggcttcccaaggatgccaaattgaaagatgttataacagtcattcgtgctgacgaggc |
206 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| || |||||||| ||||| |||||||| | | || |||||||| || || ||||||||||| ||||| |
|
|
| T |
29931688 |
ttgaaaatgtacctgctcctgctattgcaattgattattggagacttcctaaggatgcaactcttaaggatgttatcactgttattcgtgctgatgaggc |
29931589 |
T |
|
| Q |
207 |
tcaccatcgggatgtgaaccatttcgcttcagtgagtgt |
245 |
Q |
| |
|
||| ||| ||||||| || || || ||||| |||||||| |
|
|
| T |
29931588 |
tcatcatagggatgtcaatcactttgcttcggtgagtgt |
29931550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 221
Target Start/End: Complemental strand, 29934412 - 29934298
Alignment:
| Q |
107 |
ttgaaaatgttcctgctcctgccattgcaatagactattggaggcttcccaaggatgccaaattgaaagatgttataacagtcattcgtgctgacgaggc |
206 |
Q |
| |
|
|||||||||| ||||||||||| ||||| || || |||||||| ||||| || ||||| | | || |||||| | || || ||||||||||| ||||| |
|
|
| T |
29934412 |
ttgaaaatgtacctgctcctgctattgctattgattattggagacttccaaatgatgcaactcttaaggatgttgtcactgttattcgtgctgatgaggc |
29934313 |
T |
|
| Q |
207 |
tcaccatcgggatgt |
221 |
Q |
| |
|
||| ||| ||||||| |
|
|
| T |
29934312 |
tcatcatagggatgt |
29934298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University