View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9980_high_18 (Length: 338)
Name: NF9980_high_18
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9980_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 7162579 - 7162900
Alignment:
| Q |
1 |
tcgacgattatattctatgccaaatagataagttcaattgaactagtgctattaattgaaatatttcaatccgataagcatgtgtatccagcaatagaat |
100 |
Q |
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| T |
7162579 |
tcgacgattatattctatgccaaatagataagttcaattgaactagtgctattaattgaaatatttcaatccgatatgcatgtgtatccagcaatagaat |
7162678 |
T |
|
| Q |
101 |
ccaaattaggtagataaactaatgaatgattcggaatgtctttagaattagtgataaactgacctggttgaatgatgggcaagtcttgagaattagacat |
200 |
Q |
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| T |
7162679 |
ccaaattaggtagataaactaatgaatgattcggaatgtctttagaattagtgatcaactgacctggttgaatgatgggcaagtcttgagaattagacat |
7162778 |
T |
|
| Q |
201 |
agtggataatctagaaggacggattttaaaggcgagacgacgaggacgttttggttttgagcgtttcggcttaattatcctcatcgtcttagcaaacttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7162779 |
agtggataatctagaaggacggattttaaaggcgagacgacgaggacgttttggttttgagcgttccggcttaattatcctcatcgtcttagcaaacttt |
7162878 |
T |
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| Q |
301 |
gcctcctttcctcccttcttct |
322 |
Q |
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|||||||||||||||||||||| |
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| T |
7162879 |
gcctcctttcctcccttcttct |
7162900 |
T |
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