View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9980_high_25 (Length: 262)
Name: NF9980_high_25
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9980_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 78 - 247
Target Start/End: Complemental strand, 2794153 - 2793984
Alignment:
| Q |
78 |
attgaatgtggaaggtgaattgcaacacttaccttttgggtcaagtcaagtgctccattgataattgtcgtctcatcaagtgtaagctcgccccctatcc |
177 |
Q |
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| T |
2794153 |
attgaatgtggaaggtgaattgcagaacttaccttttgggtcaagtcaagtgctccattgataattgtcgtctcatcaagtgtaagctcgccccctatcc |
2794054 |
T |
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| Q |
178 |
cagcctaaaaaacaagcaagttcaacgcttatgattcaaacaacgaaaaaagaaatagttgagtagtttc |
247 |
Q |
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| T |
2794053 |
cagcctaaaaatcaagcaggttcaacgcttatgattcaaacacggaaaaaaaaaatagttgagtagtttc |
2793984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 2794246 - 2794182
Alignment:
| Q |
11 |
cataggcaagagacttcatattacgctgcgttgaatatcatacattgaaaaatagtgttttatggacat |
79 |
Q |
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| T |
2794246 |
cataggcaagaaacttcatat----ctgtgttgagtatcatacgttgaaaaatagtgttttttggacat |
2794182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 77 - 203
Target Start/End: Complemental strand, 48669108 - 48668982
Alignment:
| Q |
77 |
cattgaatgtggaaggtgaattgcaacacttaccttttgggtcaagtcaagtgctccattgataattgtcgtctcatcaagtgtaagctcgccccctatc |
176 |
Q |
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||||||||||||||||||| |||| |||||||||||| |||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||| || |
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| T |
48669108 |
cattgaatgtggaaggtgacctgcagcacttaccttttcggtcaaatcaagtgctccactgataattgtcgtctcatcatgtgtaagctcgccccctttc |
48669009 |
T |
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| Q |
177 |
ccagcctaaaaaacaagcaagttcaac |
203 |
Q |
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| T |
48669008 |
ccagcctaaaaaacaagaaagttcaac |
48668982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 16389911 - 16389734
Alignment:
| Q |
18 |
aagagacttcatattacgctgcgttgaatatcatacattgaaaaatagtgttttatggacattgaatgtggaaggtgaattgcaacacttaccttttggg |
117 |
Q |
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|||| |||||||||| |||| ||||||||||||||||||||| | || | ||| |||||| |||| ||||||||||||| |||||||||||| || |
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| T |
16389911 |
aagaaacttcatattcttctgcattgaatatcatacattgaaaatttgtatcgtattgacattagttgtgaaaggtgaattgcagcacttaccttttcgg |
16389812 |
T |
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| Q |
118 |
tcaagtcaagtgctccattgataattgtcgtctcatcaagtgtaagctcgccccctatcccagcctaaaaaacaagca |
195 |
Q |
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| T |
16389811 |
tcaaatcaagtgctccactgataattgttgtctcatcatgtgtaagttcgccccctttcccagcctaaaaaacaagca |
16389734 |
T |
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