View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9980_high_26 (Length: 259)
Name: NF9980_high_26
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9980_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 3596916 - 3597154
Alignment:
| Q |
20 |
tacgatgctaaggttaattgattagagagattttcagaannnnnnncttctatgttgttgaaatgcattttaatatacagatgcacgacaccgg-tatga |
118 |
Q |
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| T |
3596916 |
tacgatgctaaggttaattgattagagagattttcagaatttttttcttctatgttgttgaaatgcattttaatatacagatgcacgacaccggatatga |
3597015 |
T |
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| Q |
119 |
cacagacacacacataggtacggctagtaatttaagaaaatcacataattcatctaaatcatgtgtgtctgtgttcgggtcggatatgagataaacctct |
218 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3597016 |
cacagacacacacataggtatggctagtaatttaagaaaatcacataattcatctaaatcatgtgtgtctgtgtccgggtcggatatgagataaacctct |
3597115 |
T |
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| Q |
219 |
gaatagaggtgtcggtgatacagagattttgattctgtg |
257 |
Q |
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| T |
3597116 |
gaatagaagtgtcggtgatacagagattttgattatgtg |
3597154 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 36297401 - 36297368
Alignment:
| Q |
138 |
acggctagtaatttaagaaaatcacataattcat |
171 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
36297401 |
acggctaataatttaagaaaatcacataattcat |
36297368 |
T |
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