View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9980_high_28 (Length: 239)

Name: NF9980_high_28
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9980_high_28
NF9980_high_28
[»] chr2 (1 HSPs)
chr2 (1-222)||(37090611-37090832)
[»] chr4 (2 HSPs)
chr4 (4-215)||(17135430-17135641)
chr4 (4-221)||(17348230-17348447)


Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 37090832 - 37090611
Alignment:
Q  1 cctaatccgcaaggatcttaccattatggtttgataaacacaacgcgtacaataagacttgaaaactctgcaccagttatcaatggcaagcaaagatatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37090832 cctaatccgcaaggatcttaccattatggtttgataaacacgacgcgtacaataagacttgaaaactctgcaccagttatcaatggcaagcaaagatatg 37090733  T
Q  101 ctgttaatagtgtttcgttcatccctgccgatacaccacttaaactggcggattacttcaagatctcgggagttttcagccttggaagtattccggacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37090732 ctgttaatagtgtttcgttcatccctgccgatacaccacttaaactggcggattacttcaagatctcgggagttttcagccttggaagtattccggacaa 37090633  T
Q  201 tcccacaggtggtggtggttac 222  Q
    ||||||||||||||||||||||    
T  37090632 tcccacaggtggtggtggttac 37090611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 215
Target Start/End: Complemental strand, 17135641 - 17135430
Alignment:
Q  4 aatccgcaaggatcttaccattatggtttgataaacacaacgcgtacaataagacttgaaaactctgcaccagttatcaatggcaagcaaagatatgctg 103  Q
    ||||| |||||||| |||||||||||  ||||||||||||| |||||||| |||||| |||| ||||| ||| ||||||| || || |||||||||||||    
T  17135641 aatccacaaggatcctaccattatggaatgataaacacaacacgtacaattagacttcaaaattctgctccaattatcaaaggaaaacaaagatatgctg 17135542  T
Q  104 ttaatagtgtttcgttcatccctgccgatacaccacttaaactggcggattacttcaagatctcgggagttttcagccttggaagtattccggacaatcc 203  Q
    | |||||||| || || |||||||| ||||||||||| ||||| || |||||||||||||||   || || ||    ||||||||||| |||||||| ||    
T  17135541 tcaatagtgtgtcatttatccctgctgatacaccactcaaactagctgattacttcaagatccaaggtgtgttttcacttggaagtatcccggacaaccc 17135442  T
Q  204 cacaggtggtgg 215  Q
    ||| ||||||||    
T  17135441 caccggtggtgg 17135430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 17348230 - 17348447
Alignment:
Q  4 aatccgcaaggatcttaccattatggtttgataaacacaacgcgtacaataagacttgaaaactctgcaccagttatcaatggcaagcaaagatatgctg 103  Q
    ||||| |||||||| |||||||||||  ||||||||||||| |||||||| |||||| |||| ||||| ||| |||||||||| || |||||||||||||    
T  17348230 aatccacaaggatcctaccattatggaatgataaacacaacacgtacaattagacttcaaaattctgctccaattatcaatggaaaacaaagatatgctg 17348329  T
Q  104 ttaatagtgtttcgttcatccctgccgatacaccacttaaactggcggattacttcaagatc--tcgggagttttcagccttggaagtattccggacaat 201  Q
    | ||  |||| || || || ||||| ||||||||||| ||||| || ||| ||||||| |||    ||| |||||||  ||||||||||| |||||||||    
T  17348330 tcaacggtgtgtcatttattcctgctgatacaccactcaaactagctgatcacttcaacatccaaggggtgttttca--cttggaagtatcccggacaat 17348427  T
Q  202 cccacaggtggtggtggtta 221  Q
    ||||| || |||||||||||    
T  17348428 cccaccggaggtggtggtta 17348447  T

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