View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9980_high_30 (Length: 234)

Name: NF9980_high_30
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9980_high_30
NF9980_high_30
[»] chr3 (2 HSPs)
chr3 (12-218)||(39838762-39838968)
chr3 (120-164)||(26411581-26411625)
[»] chr8 (3 HSPs)
chr8 (121-164)||(18897202-18897245)
chr8 (123-164)||(28566141-28566181)
chr8 (123-164)||(28573764-28573804)
[»] chr6 (1 HSPs)
chr6 (106-158)||(32613123-32613174)
[»] chr4 (2 HSPs)
chr4 (123-158)||(2185031-2185066)
chr4 (120-159)||(25869573-25869612)
[»] chr2 (2 HSPs)
chr2 (122-159)||(42187130-42187167)
chr2 (123-159)||(40791489-40791525)
[»] chr1 (2 HSPs)
chr1 (122-159)||(11438482-11438519)
chr1 (123-163)||(43446000-43446040)
[»] chr7 (2 HSPs)
chr7 (119-155)||(23735222-23735258)
chr7 (125-157)||(47824601-47824633)


Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 12 - 218
Target Start/End: Original strand, 39838762 - 39838968
Alignment:
Q  12 cataggccacaattttaccatgtatattattcaaacaatctattttgaccatannnnnnnnnnnnnnncgaagaagaagacaaacaaacttgcataaatt 111  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||    
T  39838762 catatgccacaattttaccatgtatattattcaaacaatctattttgaccatattttttactttttttcgaagaagaagacaaacaaacttgcataaatt 39838861  T
Q  112 gacaatgaagaagaatcgaacatgagactttgagaaggagcacactctaaggttaacggatgttgtttaaagttactaatgatttacgttattcattggt 211  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39838862 gacaatgaagaagaatcgaacatgagactttgagaaggaacacactctaaggttaacagatgttgtttaaagttactaatgatttacgttattcattggt 39838961  T
Q  212 atgttta 218  Q
    |||||||    
T  39838962 atgttta 39838968  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 26411625 - 26411581
Alignment:
Q  120 agaagaatcgaacatgagactttgagaaggagcacactctaaggt 164  Q
    ||||||||||||| ||| || ||||||||||||||||||| ||||    
T  26411625 agaagaatcgaacttgaaacattgagaaggagcacactctcaggt 26411581  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 164
Target Start/End: Complemental strand, 18897245 - 18897202
Alignment:
Q  121 gaagaatcgaacatgagactttgagaaggagcacactctaaggt 164  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||    
T  18897245 gaagaatcgaacatgagaccttgaggaggagcacactctaaggt 18897202  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 28566181 - 28566141
Alignment:
Q  123 agaatcgaacatgagactttgagaaggagcacactctaaggt 164  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  28566181 agaatcgaacatgagcctt-gagaaggagcacactctaaggt 28566141  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 28573804 - 28573764
Alignment:
Q  123 agaatcgaacatgagactttgagaaggagcacactctaaggt 164  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  28573804 agaatcgaacatgagcctt-gagaaggagcacactctaaggt 28573764  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 32613123 - 32613174
Alignment:
Q  106 taaattgacaatgaagaagaatcgaacatgagactttgagaaggagcacactc 158  Q
    |||||||||| |||||| |||||||||||||||  ||||||||||||||||||    
T  32613123 taaattgacactgaaga-gaatcgaacatgagatcttgagaaggagcacactc 32613174  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 2185031 - 2185066
Alignment:
Q  123 agaatcgaacatgagactttgagaaggagcacactc 158  Q
    |||||||||| |||||||||||||||||||||||||    
T  2185031 agaatcgaacctgagactttgagaaggagcacactc 2185066  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 159
Target Start/End: Original strand, 25869573 - 25869612
Alignment:
Q  120 agaagaatcgaacatgagactttgagaaggagcacactct 159  Q
    ||||||||||||||| |||||||||| |||||||||||||    
T  25869573 agaagaatcgaacataagactttgaggaggagcacactct 25869612  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 159
Target Start/End: Original strand, 42187130 - 42187167
Alignment:
Q  122 aagaatcgaacatgagactttgagaaggagcacactct 159  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  42187130 aagaatcgaacatgagaccttgagaagaagcacactct 42187167  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 40791489 - 40791525
Alignment:
Q  123 agaatcgaacatgagactttgagaaggagcacactct 159  Q
    |||||||||| |||||| |||||||||||||||||||    
T  40791489 agaatcgaacttgagaccttgagaaggagcacactct 40791525  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 159
Target Start/End: Original strand, 11438482 - 11438519
Alignment:
Q  122 aagaatcgaacatgagactttgagaaggagcacactct 159  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  11438482 aagaatcgaacatgagactttgaggaggatcacactct 11438519  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 43446040 - 43446000
Alignment:
Q  123 agaatcgaacatgagactttgagaaggagcacactctaagg 163  Q
    ||||||||||||||||| ||||| |||||||||||| ||||    
T  43446040 agaatcgaacatgagaccttgaggaggagcacactccaagg 43446000  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 23735222 - 23735258
Alignment:
Q  119 aagaagaatcgaacatgagactttgagaaggagcaca 155  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  23735222 aagaagaatcgaatatgagactttgaggaggagcaca 23735258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 47824601 - 47824633
Alignment:
Q  125 aatcgaacatgagactttgagaaggagcacact 157  Q
    ||||||||||||||||||||| |||||||||||    
T  47824601 aatcgaacatgagactttgaggaggagcacact 47824633  T

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