View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9980_high_36 (Length: 216)
Name: NF9980_high_36
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9980_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 14138770 - 14138570
Alignment:
| Q |
1 |
caaattcttgttctgatggatggtatactggacattctggaatcatgtttgtccaatttagatcacccagatcaaatttactcgatttgtgagtaattga |
100 |
Q |
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| T |
14138770 |
caaactcttgttctgatggatggtatactggacattctggaatcatgtttgtccaatttagatcatccaaatcaaatttactcgatttgtgagtaattga |
14138671 |
T |
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| Q |
101 |
acttttttcaaccatttttcttctaattttacttctcttacatttgacaacatttgttgcacccatattgtttctttttatataacaagcatctaatatt |
200 |
Q |
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| T |
14138670 |
acttttttcaaccatttttcttctaattttacttctcttacatttgacaacatttgttgcacccatattgtttctttttatataacaagcatctaatatt |
14138571 |
T |
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| Q |
201 |
t |
201 |
Q |
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| T |
14138570 |
t |
14138570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 14152542 - 14152476
Alignment:
| Q |
141 |
catttgacaacatttgttgcacccatattgtttctt-tttatataacaagcatctaatatttgatga |
206 |
Q |
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| T |
14152542 |
catttgacaacatttgttgcagccgttttgtttattatttatataaccaacatctaatatttcatga |
14152476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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