View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9980_low_10 (Length: 471)
Name: NF9980_low_10
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9980_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 8e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 282 - 463
Target Start/End: Original strand, 12873082 - 12873263
Alignment:
| Q |
282 |
attaagtgggtgttacattgtttatatcctttctatatgtggtcttaatctttttagtcaacgtttgtggtcttaatatcaagaatctcactttctttta |
381 |
Q |
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| T |
12873082 |
attaagtgggtgttacattgtttatatcctttctatatgtggtcttaatctttttagtcaacgtttgtggtcttaatatcaagaatctcactttctttta |
12873181 |
T |
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| Q |
382 |
caatacaatcagagttgtactgagggataaaaaatcaacaacaatgactagcaaaaggggaaataagcatacactctctgct |
463 |
Q |
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| T |
12873182 |
caatacaatcagagttgtactgagggataaaaattcaacaacaatgactagcaaaaggggaaataagcatacactctctgct |
12873263 |
T |
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Target: chr1; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 12872818 - 12873017
Alignment:
| Q |
20 |
tttgttagacaaccctttaaaaggtaatgagttaaaaagtttagtttttattagnnnnnnnntaataat---ttgtttttgtgttatgttggttgaggtt |
116 |
Q |
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| T |
12872818 |
tttgttagacaaccctttaaaaggtaatgagttaaaaagtttagtttttattagaaaataaaaaataaaaaattgtttttgtgctatgttggttgaggtt |
12872917 |
T |
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| Q |
117 |
ggtattgttgatatttgggttcatatttgatgtggaggagaagacttcaacagtgattactgctctgctttataacgcataaatatacttccaaaactaa |
216 |
Q |
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| T |
12872918 |
ggtattgttgatatttgggttcatatttgatgtggaggagaagacttcaacagtgattactgctctgctttataacgcataaatatacttccaaaactaa |
12873017 |
T |
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