View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9980_low_11 (Length: 461)
Name: NF9980_low_11
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9980_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 403; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 9656497 - 9656940
Alignment:
| Q |
1 |
ttgatccgtatttcactgaaactttatgtaatatcaaggattgtgatgcaaccacaaaatggctatggcaatttgaaatggttgcaaattttcgcattgg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9656497 |
ttgatccgtatttcactgaaactttatgtaatatcaaggattgtgatgcaaccacaaaatggctatggcaatttgaaatggttgcaaattttcgcattgg |
9656596 |
T |
|
| Q |
101 |
ttgtatttgaatacacaatttgacctataagggtatatacatgaaacataatatattatcatgatctatacctcttcggcagtgctggcaacagcatcaa |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9656597 |
ttgtatttgaataca--atttgacctataagggtatatacatgaaacataatatattatcatgatctatacctcttcggcagtgctggcaacagcatcaa |
9656694 |
T |
|
| Q |
201 |
aaccaatgtatgcnnnnnnngcggttgcagaaccagcaaccattccatctaccccaaaaggaaaatacctattaattaaaacaagagataaatattattc |
300 |
Q |
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||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
9656695 |
aaccaatgtatgcaaaaaaagctgttgcagaaccagcaaccattccatctaccccaaaaggaaaatacctatta-ttaaaacaagagataaatattattc |
9656793 |
T |
|
| Q |
301 |
agtaacctgaagagaccaaatatagagtgggggtaaagatgtaaaagttaccctgttgggagtttatatccaatccatccagttttgaatcctaaataac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9656794 |
agtaacctgaagagaccaaatatagagtgggggtaaagatgtaaaagttaccctgttgggagtttatatccaatccatccagttttgaatcctaaataac |
9656893 |
T |
|
| Q |
401 |
caccagctactatgataaacattaaagcacagatattcactgatgtc |
447 |
Q |
| |
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| T |
9656894 |
caccagctactatgataaacattaaagcacagatattcactgatgtc |
9656940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 156 - 446
Target Start/End: Original strand, 9630496 - 9630802
Alignment:
| Q |
156 |
ttatcatgatctatacctcttcggcagtgctggcaacagcatcaaaaccaatgtatgcnnnnnnngcggttgcagaaccagcaaccattccatctacccc |
255 |
Q |
| |
|
||||||| ||| |||||||||| ||||||||||||| || |||||||| || ||||| || |||||||||| ||||||||||||||||| ||| |
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| T |
9630496 |
ttatcattatcaatacctcttcagcagtgctggcaattgcttcaaaacctatatatgcaaaaaatgctgttgcagaactagcaaccattccatctatccc |
9630595 |
T |
|
| Q |
256 |
aaaaggaaaatacctattaattaaaacaagagataaatattattcagtaacctgaagagaccaaatatag----agtgggggt---------aaagatgt |
342 |
Q |
| |
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||| |||||||||||| |||||||||||||| | |||||||||||| |||| ||||||||| ||| |||| ||| ||| | |||||||| |
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| T |
9630596 |
aaatggaaaataccta-taattaaaacaagatacaaatattattcaataacttgaagagacgaaaaatagatgtagtagggatgtgttgaagaaagatgt |
9630694 |
T |
|
| Q |
343 |
a----aaagttaccctgttgggagtttatatccaatccatccagttttgaatcctaaataaccaccagctactatgataaacattaaagcacagatattc |
438 |
Q |
| |
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| | ||||||| | ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||| |||||| |
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| T |
9630695 |
agattacgcttaccctttagggagttcatatccaatccatccagttttgaatcccaaataaccaccagctactatgacaaacatcaaagcacatatattc |
9630794 |
T |
|
| Q |
439 |
actgatgt |
446 |
Q |
| |
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| |||||| |
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|
| T |
9630795 |
attgatgt |
9630802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 162 - 326
Target Start/End: Original strand, 9615955 - 9616118
Alignment:
| Q |
162 |
tgatctatacctcttcggcagtgctggcaacagcatcaaaaccaatgtatgcnnnnnnngcggttgcagaaccagcaaccattccatctaccccaaaagg |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||| |||||||| || |||||||||| |||||||||||||| ||||||||| || |
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| T |
9615955 |
tgatctatacctcttcggcagtgctggcaattgcttcaaaacctatgtatgcaaaaaaggctgttgcagaactagcaaccattccatttaccccaaatgg |
9616054 |
T |
|
| Q |
262 |
aaaatacctattaattaaaacaagagataaatattattcagtaacctgaagagaccaaatataga |
326 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||| |||| ||||||||||||| ||||| |
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| T |
9616055 |
aaaatacctat-aattaaaacaggagataaatattattcaataacttgaagagaccaaaaataga |
9616118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 335 - 446
Target Start/End: Original strand, 9640540 - 9640649
Alignment:
| Q |
335 |
aaagatgtaaaagttaccctgttgggagtttatatccaatccatccagttttgaatcctaaataaccaccagctactatgataaacattaaagcacagat |
434 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| || |
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| T |
9640540 |
aaagatgtaaa--ttaccctgtagggagtttatatccaatccatccagttttgaatcccaaataaccaccagctacgatgataaacatcaaagcacatat |
9640637 |
T |
|
| Q |
435 |
attcactgatgt |
446 |
Q |
| |
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|||||||||||| |
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|
| T |
9640638 |
attcactgatgt |
9640649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 155 - 297
Target Start/End: Original strand, 9640360 - 9640501
Alignment:
| Q |
155 |
attatcatgatctatacctcttcggcagtgctggcaacagcatcaaaaccaatgtatgcnnnnnnngcggttgcagaaccagcaaccattccatctaccc |
254 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||| ||||||||||| |||||||| || ||||||||||||||||||||||||||||| | |
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|
| T |
9640360 |
attatcatgatctatacctcttcagcagcgctggcaactgcatcaaaacctatgtatgcaaaaaaagctgttgcagaaccagcaaccattccatctactc |
9640459 |
T |
|
| Q |
255 |
caaaaggaaaatacctattaattaaaacaagagataaatatta |
297 |
Q |
| |
|
|||| | |||||||||||| |||||||||||| | |||||||| |
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| T |
9640460 |
caaatgcaaaatacctatt-attaaaacaagatacaaatatta |
9640501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 348 - 447
Target Start/End: Original strand, 9616157 - 9616256
Alignment:
| Q |
348 |
ttaccctgttgggagtttatatccaatccatccagttttgaatcctaaataaccaccagctactatgataaacattaaagcacagatattcactgatgtc |
447 |
Q |
| |
|
||||||| | || |||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||| ||||||| ||||||| |
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| T |
9616157 |
ttaccctttaggaagttcatatccaatccatccagttttgaatcccaaataaccaccagctactatgacaaacatcaaagcacatatattcattgatgtc |
9616256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 281
Target Start/End: Complemental strand, 33643349 - 33643233
Alignment:
| Q |
165 |
tctatacctcttcggcagtgctggcaacagcatcaaaaccaatgtatgcnnnnnnngcggttgcagaaccagcaaccattccatctaccccaaaaggaaa |
264 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||| | ||||| | || ||||||||||||| ||| ||||| || ||||| ||||| |
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|
| T |
33643349 |
tctatacctcttcagcagtgctggcaactgcatcaaaacctacatatgcaaaaaagactgtcgcagaaccagcaagcatcccatcaactccaaagggaaa |
33643250 |
T |
|
| Q |
265 |
atacctattaattaaaa |
281 |
Q |
| |
|
||| |||||||| |||| |
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|
| T |
33643249 |
atatctattaatgaaaa |
33643233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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