View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9980_low_13 (Length: 437)
Name: NF9980_low_13
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9980_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 8e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 5377858 - 5378064
Alignment:
| Q |
17 |
aaaaaataacttcccttcagttttatttttgatatttacaacttacaaaaactgtaatagagcaccaacagtgccatgtgtagagtatttgtttcccatc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5377858 |
aaaaaataacttcccttcagttttatttttgatatttacaacttacaaaaattgtaatagagcaccaacagtgccatgtgtagagtatttgtttctcatc |
5377957 |
T |
|
| Q |
117 |
ttctctactggcctttattttacgttagattgtagagtagagtaagggaaaaagatggagaaggttgaaggcttcaatttttatcattgcaaaatggtaa |
216 |
Q |
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|| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5377958 |
ttttctactggcctttgttttacgttagattgtagaggagagtaagggaaaaagatggagaaggctgaaggcttcaatttttatcattgcaaaatggtaa |
5378057 |
T |
|
| Q |
217 |
tttgcat |
223 |
Q |
| |
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||||||| |
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| T |
5378058 |
tttgcat |
5378064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 289 - 409
Target Start/End: Original strand, 5378130 - 5378250
Alignment:
| Q |
289 |
ataattataattcatctgctaattattattttcaaagacaaggtgactttttcatctgctaatgtttttgttgaaagaattcatctgctaatgttaatac |
388 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5378130 |
ataattataattcatctgctaattattatttttaaagacaatgtgactttttcatctgctaatgtttttgttgaaagaattcatctgctgatgttaatac |
5378229 |
T |
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| Q |
389 |
ttaactaagcattgatgtcgt |
409 |
Q |
| |
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||||||||||||||||||||| |
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| T |
5378230 |
ttaactaagcattgatgtcgt |
5378250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 179; Significance: 2e-96; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 19000747 - 19000953
Alignment:
| Q |
17 |
aaaaaataacttcccttcagttttatttttgatatttacaacttacaaaaactgtaatagagcaccaacagtgccatgtgtagagtatttgtttcccatc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
19000747 |
aaaaaataacttcccttcagttttatttttgatatttacaacttacaaaaactgtaatagagcaccaacagtgccatgtatagagtatttgtttctcatc |
19000846 |
T |
|
| Q |
117 |
ttctctactggcctttattttacgttagattgtagagtagagtaagggaaaaagatggagaaggttgaaggcttcaatttttatcattgcaaaatggtaa |
216 |
Q |
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|| |||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
19000847 |
ttttctattggcctttgttttacgttagattgtagaggagagtaagggaaaaagatggagaaggctgaaggcttcaatttttatcattgcaaaatggtaa |
19000946 |
T |
|
| Q |
217 |
tttgcat |
223 |
Q |
| |
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||||||| |
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|
| T |
19000947 |
tttgcat |
19000953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 22324127 - 22324279
Alignment:
| Q |
17 |
aaaaaataacttcccttcagttttatttttgatatttacaacttacaaaaactgtaatagagcaccaacagtgccatgtgtagagtatttgtttcccatc |
116 |
Q |
| |
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|||| |||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||| |||||| ||| ||||| ||||||| ||| |
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| T |
22324127 |
aaaatataacttcccttcagtttaattttttatatttacaacttacaaaaactgtagtagagcaccaaccgtgcca--tgttgagtaattgtttctcata |
22324224 |
T |
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| Q |
117 |
ttctctactggccttt-attttacgttagattgtagagtagagtaagggaaaaag |
170 |
Q |
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|| |||||| |||||| |||||||||||||| ||||| |||||||||||||||| |
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| T |
22324225 |
ttttctactagcctttgtttttacgttagattttagaggagagtaagggaaaaag |
22324279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 336 - 429
Target Start/End: Original strand, 19001013 - 19001106
Alignment:
| Q |
336 |
tttttcatctgctaatgtttttgttgaaagaattcatctgctaatgttaatacttaactaagcattgatgtcgttgatattaatccatcttatt |
429 |
Q |
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|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||| ||||||||| |
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| T |
19001013 |
tttttcatttgctaatgtttttgttgaaagaattcatctcctaatgttaatacttaactaagcattgatctcgctgatattaattcatcttatt |
19001106 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 339 - 402
Target Start/End: Original strand, 22324422 - 22324489
Alignment:
| Q |
339 |
ttcatctgctaatgtttt----tgttgaaagaattcatctgctaatgttaatacttaactaagcattg |
402 |
Q |
| |
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|||||||||||||||||| | |||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
22324422 |
ttcatctgctaatgttttgtttttttgaaagaattcatctgctattgttaatatttaactaagcattg |
22324489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 22324299 - 22324348
Alignment:
| Q |
166 |
aaaagatggagaaggttgaaggcttcaatttttatcattgcaaaatggta |
215 |
Q |
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| T |
22324299 |
aaaagatggagaaggccgaaggcttcaattttttgcattgcaaaatggta |
22324348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 402
Target Start/End: Original strand, 23219650 - 23219699
Alignment:
| Q |
353 |
tttttgttgaaagaattcatctgctaatgttaatacttaactaagcattg |
402 |
Q |
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||||| |||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
23219650 |
ttttttttgaaagaatccatctgctaatgttaatatttaactaagcattg |
23219699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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