View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9980_low_14 (Length: 435)
Name: NF9980_low_14
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9980_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 8330811 - 8330383
Alignment:
| Q |
1 |
taggcaatgagatggacatcacatcccctgatgctgttcacaaagttagacaaaagatcatagagcatatggatttatggttgtctcagtgtcaggacac |
100 |
Q |
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|||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8330811 |
taggcaatgagaagaactgcacatcccctgatgctgttcacaaagttagacaaaagatcatagagcatatggatttatggttgtctcagtgtcaggacac |
8330712 |
T |
|
| Q |
101 |
aggcaggacttgtatataagatttgtatgagttgcatgatgttacaactagaagttactctggtttctagtattaatacttaattatatgttgtgctttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8330711 |
gggcaggacttgtatataagatttgtatgagttgcatgatgt-acaactagaagttactctggtttctagtattaatacttaattatatgttgtgctttg |
8330613 |
T |
|
| Q |
201 |
aataatcttgtgtaagttgatcaaatgcaaggcaaaacatatttgtacaaagttattttatatcgttcaatctcaagataatagtgtaccagttatatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8330612 |
aataatcttgtgtaagttgatcaaatgcaaggcaaaacatatttgtacaaagttattttatatcgttcaatctcaagataatagtgtaccagttatatat |
8330513 |
T |
|
| Q |
301 |
ttataacatttgggtgtcattggcctatagtgaaaatctacaaagaaaatggatgtctacttagtagtgactttggtcatttttcattggccactgatgc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8330512 |
ttataacatttgggtgtcattggcctatagtgaaaatctacaaagaaaatggatgtctacttagtagtgactttggtcatttttcattggtcactgatgc |
8330413 |
T |
|
| Q |
401 |
atagagtcattagtccctgtctctgcttct |
430 |
Q |
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||||| ||||||||||||||||||| |||| |
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| T |
8330412 |
atagaatcattagtccctgtctctgtttct |
8330383 |
T |
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