View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9980_low_18 (Length: 367)

Name: NF9980_low_18
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9980_low_18
NF9980_low_18
[»] chr2 (3 HSPs)
chr2 (21-324)||(4276313-4276616)
chr2 (32-117)||(12564933-12565018)
chr2 (28-111)||(355564-355647)
[»] chr8 (4 HSPs)
chr8 (21-118)||(23447742-23447839)
chr8 (28-84)||(25320192-25320248)
chr8 (28-84)||(19752886-19752942)
chr8 (21-81)||(13448937-13448997)
[»] chr3 (2 HSPs)
chr3 (32-118)||(47772701-47772787)
chr3 (28-84)||(1233174-1233230)
[»] chr6 (3 HSPs)
chr6 (28-117)||(13413446-13413535)
chr6 (28-84)||(17798847-17798903)
chr6 (35-101)||(31292747-31292811)
[»] chr4 (2 HSPs)
chr4 (28-117)||(49194379-49194468)
chr4 (28-84)||(43040687-43040743)
[»] chr7 (2 HSPs)
chr7 (32-101)||(7634821-7634890)
chr7 (28-84)||(25987515-25987570)
[»] chr5 (1 HSPs)
chr5 (28-81)||(10460550-10460603)
[»] chr1 (1 HSPs)
chr1 (28-84)||(13112991-13113047)


Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 21 - 324
Target Start/End: Complemental strand, 4276616 - 4276313
Alignment:
Q  21 agagcctaggatatttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataaagtaccatgaccatctcccaacacccgtcgaatgttcaa 120  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4276616 agagcctaagatatttgaatcgcaaaggcgactccccgacccaatgatcataccaaaataaagtaccatgaccatctcccaacacccgtcgaatgttcaa 4276517  T
Q  121 gttctgaaataagaccaaagtgtcannnnnnnnnnnggtaacaaccaaagtgtcatttgatttctaaaataataaatactacgtatatgacaaactatat 220  Q
    |||||||||||||||||||||||||           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4276516 gttctgaaataagaccaaagtgtcatctttttttttggtaacaaccaaagtgtcatctgatttctaaaataataaatactacgtatatgacaaactatat 4276417  T
Q  221 tttaaaagaagacttaaataatgctatttgtcttgtaccaaaaataaataaataatgctatttgtgttttaaacgaaagatcaataaagatctaatattc 320  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4276416 tttaaaagaagacttaaataatgctatttgtcttgtaccaaaaaaaataaaataatgctatttgtgttttaaacggaagatcaataaagatctaatattc 4276317  T
Q  321 cctt 324  Q
    ||||    
T  4276316 cctt 4276313  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 12564933 - 12565018
Alignment:
Q  32 tatttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataaagtaccatgaccatctcccaacacccgtcgaatgtt 117  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||    
T  12564933 tatttgaatcgcaatggcgactccccgacccaatgatcataccaaaataaagtaccaagaccatctctcaccacccgtcgaatgtt 12565018  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 355647 - 355564
Alignment:
Q  28 aggatatttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataaagtaccatgaccatctcccaacacccgtcg 111  Q
    |||| |||| |||||||||||| | ||||||||||||| |||| ||||||||||||||  |  |||||||||||  ||||||||    
T  355647 aggaaatttaaatcgcaaaggcaattccccaacccaattatcaaaccaaaataaagtagtagaaccatctcccacaacccgtcg 355564  T

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Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 23447742 - 23447839
Alignment:
Q  21 agagcctaggatatttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataaagtaccatgaccatctcccaacacccgtcgaatgttc 118  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  23447742 agagcctaggatatttgaatcgcaaaggcgagtccccgacccaatgatcataccaaaataaagtaccttgaccatctcccaccatccgtcgaatgttc 23447839  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 25320192 - 25320248
Alignment:
Q  28 aggatatttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataaagt 84  Q
    |||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||    
T  25320192 aggatatttgtatcgcaaaggcgactccccgacccaatgatcatgccaaaataaagt 25320248  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 19752942 - 19752886
Alignment:
Q  28 aggatatttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataaagt 84  Q
    ||||| |||| | ||||||||||||||||||||||||||||||| ||||||||||||    
T  19752942 aggatgtttgtaccgcaaaggcgactccccaacccaatgatcatgccaaaataaagt 19752886  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 13448937 - 13448997
Alignment:
Q  21 agagcctaggatatttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataa 81  Q
    |||||| |||| ||||||||||||||| ||  ||||| |||||||||||  ||||||||||    
T  13448937 agagccgaggaaatttgaatcgcaaagacgtttccccgacccaatgatcgaaccaaaataa 13448997  T

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Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 47772701 - 47772787
Alignment:
Q  32 tatttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataaagtaccatgaccatctcccaacacccgtcgaatgttc 118  Q
    |||||||||||||| ||||||||||| ||||||| ||||| |||||||||||||| | |||||||||||| ||||||||||||||||    
T  47772701 tatttgaatcgcaatggcgactccccgacccaattatcatgccaaaataaagtactaagaccatctcccaccacccgtcgaatgttc 47772787  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 1233230 - 1233174
Alignment:
Q  28 aggatatttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataaagt 84  Q
    |||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||    
T  1233230 aggatatttgcatcgcaaaggcgactccccgacccaatgatcatgccaaaataaagt 1233174  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 13413446 - 13413535
Alignment:
Q  28 aggatatttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataaagtaccatgaccatctcccaacacccgtcgaatgtt 117  Q
    |||| |||||||||||||||||||||||||||||||||||||  |||||||||| | || ||  |||||||||| |||||| || |||||    
T  13413446 aggaaatttgaatcgcaaaggcgactccccaacccaatgatcgaaccaaaataaggcactatttccatctcccaccacccgacggatgtt 13413535  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 17798847 - 17798903
Alignment:
Q  28 aggatatttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataaagt 84  Q
    |||||||| | ||||||||||||||||||| ||||||||||||| ||||||||||||    
T  17798847 aggatattggtatcgcaaaggcgactccccgacccaatgatcatgccaaaataaagt 17798903  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 31292811 - 31292747
Alignment:
Q  35 ttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataaagtaccatgaccatctccca 101  Q
    ||||||||||||||||| |||||||||||||||||  |||| |  ||||||| | ||||||||||||    
T  31292811 ttgaatcgcaaaggcgattccccaacccaatgatctaaccaga--aaagtactacgaccatctccca 31292747  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 49194379 - 49194468
Alignment:
Q  28 aggatatttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataaagtaccatgaccatctcccaacacccgtcgaatgtt 117  Q
    |||| |||||| |||||||||||| ||||| |||||||||||  |||||||| | |||| | ||||||||||||  ||||||||||||||    
T  49194379 aggaaatttgagtcgcaaaggcgaatccccgacccaatgatcgaaccaaaatgaggtactacgaccatctcccacaacccgtcgaatgtt 49194468  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 43040743 - 43040687
Alignment:
Q  28 aggatatttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataaagt 84  Q
    |||||||||| ||||||||||||||| ||| ||||||||||||| ||||||||||||    
T  43040743 aggatatttgtatcgcaaaggcgacttcccgacccaatgatcatgccaaaataaagt 43040687  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 7634890 - 7634821
Alignment:
Q  32 tatttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataaagtaccatgaccatctccca 101  Q
    |||||||||||||| ||||||||||| ||| ||||||||| | |||||||||||  | ||||||||||||    
T  7634890 tatttgaatcgcaatggcgactccccgaccgaatgatcatgctaaaataaagtattaagaccatctccca 7634821  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 25987570 - 25987515
Alignment:
Q  28 aggatatttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataaagt 84  Q
    |||||||||| ||||||||||||||| ||| ||||||||||||| ||||||||||||    
T  25987570 aggatatttgtatcgcaaaggcgact-cccgacccaatgatcatgccaaaataaagt 25987515  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 10460550 - 10460603
Alignment:
Q  28 aggatatttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataa 81  Q
    |||| |||| |||||||||||||| ||||||| |||||||||| ||||||||||    
T  10460550 aggaaatttaaatcgcaaaggcgagtccccaatccaatgatcaaaccaaaataa 10460603  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 13113047 - 13112991
Alignment:
Q  28 aggatatttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataaagt 84  Q
    |||||||||  |||||||||||||| | ||  |||||||||||| ||||||||||||    
T  13113047 aggatatttatatcgcaaaggcgacactccggcccaatgatcatgccaaaataaagt 13112991  T

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