View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9980_low_19 (Length: 364)
Name: NF9980_low_19
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9980_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 44342271 - 44342621
Alignment:
| Q |
1 |
caactcccttccagagcgagataccaaacaaaccatatctttatttcaactaacaaattgattgatgaatat------atagaaaagagatcaagtgatg |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44342271 |
caactcccttccagagcgagataccaaacaaaccatatctttatttcaactaacaaattgattgatgaatatatatatatagaaaagagatcaagtgatg |
44342370 |
T |
|
| Q |
95 |
atatgttaactagagagaatattaagaatgaaggatggatatatagaaagagtgggcaagaggaaaggtatatat-aatctaattctaaccagacatacc |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44342371 |
atatgttaactagagagaatattaagaatgaaggatggatatatagaaagagtgggcaagaggaaaggtatatataaatctaattctaaccagaca---- |
44342466 |
T |
|
| Q |
194 |
aataccaaacgcgttattgtcacgttccttgtgcttattaagtatctatctatcttcacatcacatggaatattaaaataataataatgctgatttctaa |
293 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44342467 |
cataccaaacgcgttattgtcgcgttccttgtgcttattaagtatctatctatcttcacatcacatggaatattaaaataataataatgctgatttctaa |
44342566 |
T |
|
| Q |
294 |
catgtcattatatggaatatgtgtaatataatgaaacgatgtttagattgagccttctgtg |
354 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44342567 |
catgtcattatatggaatat------aataatgaaacgatgtttagattgagccttctgtg |
44342621 |
T |
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