View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9980_low_20 (Length: 360)
Name: NF9980_low_20
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9980_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 345
Target Start/End: Original strand, 4468370 - 4468704
Alignment:
| Q |
13 |
cagatgaataactagagggggaatcatgcattcatgaaatatatgaaaatcaaatagttcataatttagctccaatttttctactttcaaacatcactt- |
111 |
Q |
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| T |
4468370 |
cagatgaataactagagggggaatcatgcattcatgaaatatatgaaaatcaaatagttcataatttagctccaatttttctactttcaaacatcactta |
4468469 |
T |
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| Q |
112 |
tgttatgaactggcataggcctcaaaatcttcgttatgtaaggctaaacacacaggctcaaccatggattctcactatcccgtaacgcctcaatggctag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4468470 |
tgttatgaactggcataggcctcaaaatcttcgttatgtaaggctaaacacacaggctcaaccatggattctcactatcccgtaacgcctcaatggctag |
4468569 |
T |
|
| Q |
212 |
ctcagttctagattcttgatcatgtgtaacacccccaacag-tagtaatagtcgttggagctgaacactgataaacgtcgtatgtaacgaaccctttgtc |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4468570 |
ctcagttctagattcttgatcatgtgtaacacccccaacggctagtaatagtcgttggagctgaacactgataaacgtagtatgtaacgaaccctttgtc |
4468669 |
T |
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| Q |
311 |
agtctctaacaactccttgtcagtgcctataaaat |
345 |
Q |
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| ||||||||||||||||||||||||||||||||| |
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| T |
4468670 |
aatctctaacaactccttgtcagtgcctataaaat |
4468704 |
T |
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