View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9980_low_21 (Length: 356)
Name: NF9980_low_21
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9980_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 7 - 341
Target Start/End: Complemental strand, 8458862 - 8458528
Alignment:
| Q |
7 |
tttggtgttgtatggatcgtcctttattttgtaattatttacataattcaattctgccaccaaagatctattaggaagccttggaatggaaaatttggtc |
106 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8458862 |
tttggagttgtatggatcatcctttattttgtaattatttacataattcaattctgccaccaaagatctattaggaagccttggaatggaaaatttggtc |
8458763 |
T |
|
| Q |
107 |
agctgaatcttctgcaccttgtttcttgctgaaattcctcttgtattacaataacaaaaagaagaaattctatctgaaatcaaagatttttccatgtgct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8458762 |
agctgaatcttctgcaccttgtttcttgctgaaattcctcttgtattacaataacaaaaagaagaaattctatctgaaatcaaagatttttccatgtgct |
8458663 |
T |
|
| Q |
207 |
atagtatcaaatgtgtgtcagtatttaattatatattgttgttctatatatgaaggcttgaactaatgtatagaattggtatgagaatgaattataacat |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8458662 |
atagtatcaaatgtgtgtcagtatttaattatagattgttgttctatatatgaaggcttgaactaatgtatagaattggtatgagaatgaattataacat |
8458563 |
T |
|
| Q |
307 |
gatcttatatatagaacatgcatataatttatttc |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
8458562 |
gatcttatatatagaacatgcatataatttatttc |
8458528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 172
Target Start/End: Complemental strand, 1618097 - 1618009
Alignment:
| Q |
81 |
gaagccttggaatggaaaatttggtcagctgaatcttctgcaccttgtttcttgctgaaattcctcttgtattacaataacaaaaagaagaa |
172 |
Q |
| |
|
|||| ||||||||||| ||||||| ||||||||||| |||| ||||||||| ||||||| || | ||| ||||||| ||||||||||| |
|
|
| T |
1618097 |
gaaggcttggaatggagaatttggatagctgaatctt---caccgtgtttcttgtagaaattcttcctctatgacaataagaaaaagaagaa |
1618009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University