View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9980_low_22 (Length: 350)
Name: NF9980_low_22
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9980_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 7269848 - 7270186
Alignment:
| Q |
1 |
caaatatcatgttttttgtttgtgttttctcgtatgttctactaatcaatgaaaacctagttgttggattatccaatccctaatattggctgcaaatgct |
100 |
Q |
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| T |
7269848 |
caaatatcatgttttttgtttgtgttttctcgtatgttctactaatcgttgaaaacctagatgttggattatccaatccctaatattggctgcaaatgct |
7269947 |
T |
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| Q |
101 |
atagtcacaactatggtcctaagttgcaactgcagttatgctgtagactttgatattttgacaaaatattggcaaatacgatcaatatagtcgcaatcac |
200 |
Q |
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| T |
7269948 |
atagtcacaattatggtcctaaattgcaactggagttacgctgcaaactttgatattt-gacaaaatataggcaaatacgatcaatatagtcgcaatcac |
7270046 |
T |
|
| Q |
201 |
aattgcgataacattgcaaagacttctaaaacctttatatcgcgaccacaattgcggtcggaccacaattttgaaaagcacataatgttaaaaacatggc |
300 |
Q |
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| T |
7270047 |
aattgcgatatcattgcaaagacttctaaaacctttatatcgcgaccacaattgcggtcggaccacaattttgaaaagcacataatgttaaaaacatggc |
7270146 |
T |
|
| Q |
301 |
atgttaattctgtaagttctactacaacaattgacctatg |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
7270147 |
atgttaattctgtaagttctactacaacaattgacctatg |
7270186 |
T |
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