View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9980_low_23 (Length: 349)
Name: NF9980_low_23
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9980_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 321
Target Start/End: Original strand, 5901376 - 5901679
Alignment:
| Q |
17 |
atggtttggttatgtggcatatcatatcaacacagagatcatcatacacgtgagttcatggttttcacattgaaaatgcattagaacgtttcagccataa |
116 |
Q |
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| T |
5901376 |
atggtttggttat-tggcatatcatatcaacacagagatcatcatacacgtgaattcatggttttcacattgaaaatgcattagaacgtttcagccataa |
5901474 |
T |
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| Q |
117 |
tttaaacnnnnnnnnn-aagaggcaacttgtttttaaacttattatttaaacttatgaatcacattccaagccaaaataggagagccacatgtgttgtca |
215 |
Q |
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| T |
5901475 |
tttaaacttttttttttaagag-caacttgtttttaaacttattatttaaacttatgaatcacattccaagccaaaataggagagccacatgtgttatca |
5901573 |
T |
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| Q |
216 |
atgctggcttgcactacctagccatgtactttgcatgtagagagagaccttccacgaaaatgctccaagtgcattgacgtattagaatttgataccgata |
315 |
Q |
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| T |
5901574 |
atgctggcttgcactacctagccatgtactttgcatgtagagagagaccttccacgaaaatgctccaaatgcattgacgtattagaatttgataccgata |
5901673 |
T |
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| Q |
316 |
gcatat |
321 |
Q |
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||||| |
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| T |
5901674 |
tcatat |
5901679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 311
Target Start/End: Complemental strand, 5920205 - 5920132
Alignment:
| Q |
234 |
tagccatgtactttgcatgtagagagagaccttccacgaaaatgctccaagtgcattgacgtattagaatttgatacc |
311 |
Q |
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|||||||||||||||||||||||||| |||||||||||| | ||||||| || ||||| |||||||||||||| |
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| T |
5920205 |
tagccatgtactttgcatgtagagag----cttccacgaaaagctttcaagtgccttaacgtaatagaatttgatacc |
5920132 |
T |
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