View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9980_low_27 (Length: 284)

Name: NF9980_low_27
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9980_low_27
NF9980_low_27
[»] chr6 (3 HSPs)
chr6 (19-274)||(3706930-3707189)
chr6 (117-153)||(6190126-6190162)
chr6 (117-182)||(29334120-29334185)
[»] chr4 (3 HSPs)
chr4 (117-223)||(32104735-32104840)
chr4 (117-185)||(20400854-20400923)
chr4 (117-242)||(41421113-41421237)
[»] chr3 (4 HSPs)
chr3 (117-228)||(41907329-41907440)
chr3 (127-233)||(1863630-1863738)
chr3 (134-186)||(557844-557897)
chr3 (148-204)||(47721142-47721198)
[»] chr8 (2 HSPs)
chr8 (140-186)||(33299393-33299440)
chr8 (139-207)||(21007056-21007124)
[»] chr2 (1 HSPs)
chr2 (117-167)||(44742478-44742529)
[»] chr1 (3 HSPs)
chr1 (126-188)||(5533031-5533093)
chr1 (117-228)||(26759656-26759768)
chr1 (128-175)||(15309374-15309422)
[»] chr7 (1 HSPs)
chr7 (146-204)||(1764019-1764077)
[»] chr5 (2 HSPs)
chr5 (136-186)||(35077822-35077873)
chr5 (126-186)||(31566996-31567058)


Alignment Details
Target: chr6 (Bit Score: 161; Significance: 7e-86; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 19 - 274
Target Start/End: Original strand, 3706930 - 3707189
Alignment:
Q  19 catcaaattgatgagtactagactactagctttgaatatacttaaaaacattg-gaaggaagatttaattaacttataaactaggttttcgtaaacttct 117  Q
    ||||||||||| |||||||||||| |||| |||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||| |    
T  3706930 catcaaattgaagagtactagactcctagttttgaatatacttagaaacattttgaaggaagatttaattaacttataaactaggttttcgtaaactttt 3707029  T
Q  118 tttttaggcaaaaggaaaaatatattaaataaaataaagagatac--agagattgg-gggacattagacctggctccgctacaacccaaacgaaactaca 214  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||  |||||||||  |||||||||||||| ||||| |||||||||||||| ||||||    
T  3707030 ttttcaggcaaaaggaaaaatagattaaataaaataaagagatacagagagattggatggacattagacctgactccggtacaacccaaacgagactaca 3707129  T
Q  215 tcgtgataaatcagatctagtagatcaatcctagtctctcctaacacaaattcattcatc 274  Q
    ||||||||||||||||||| | || ||| |||| ||| ||||||||||||||||||||||    
T  3707130 tcgtgataaatcagatctaatggaccaaccctaatctatcctaacacaaattcattcatc 3707189  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 6190162 - 6190126
Alignment:
Q  117 ttttttaggcaaaaggaaaaatatattaaataaaata 153  Q
    |||||||||||||||||||||||||| ||||||||||    
T  6190162 ttttttaggcaaaaggaaaaatatataaaataaaata 6190126  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 29334185 - 29334120
Alignment:
Q  117 ttttttaggcaaaaggaaaaatatattaaataaaataaagagatacagagattgggggacattaga 182  Q
    ||||||| |||||||||||| |||||||||||||   || | ||||||| ||||||||| ||||||    
T  29334185 ttttttaagcaaaaggaaaattatattaaataaagagaaaaaatacagacattgggggatattaga 29334120  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 223
Target Start/End: Original strand, 32104735 - 32104840
Alignment:
Q  117 ttttttaggcaaaaggaaaaatatattaaataaaataaagagatacagagattgggggacattagacctggctccgctacaacccaaacgaaactacatc 216  Q
    ||||||||||||||| ||||||||  ||||||||| ||||||||| || |||||||| ||||||||||||  || | |||||||||||||||| |||||     
T  32104735 ttttttaggcaaaagaaaaaatattataaataaaa-aaagagatatagtgattggggaacattagacctgattcaggtacaacccaaacgaaaatacatt 32104833  T
Q  217 gtgataa 223  Q
    |||||||    
T  32104834 gtgataa 32104840  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 20400923 - 20400854
Alignment:
Q  117 ttttttaggcaaaaggaaaaatatattaaat-aaaataaagagatacagagattgggggacattagacct 185  Q
    |||||||| |||||| |||| |||||||||| |||| ||||| ||||||||| | |||||||||| ||||    
T  20400923 ttttttagacaaaagtaaaattatattaaataaaaacaaagaaatacagagactaggggacattatacct 20400854  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 242
Target Start/End: Original strand, 41421113 - 41421237
Alignment:
Q  117 ttttttaggcaaaaggaaaaatatattaaataaaataaagagatacagagattgggggacattagacctggctccgctacaacccaaacgaaactacatc 216  Q
    |||||||| ||||||  ||||||||| ||  |||| || |||||||||||| | ||||  |||||||||| ||| | ||||||| ||||| || ||| ||    
T  41421113 ttttttagacaaaagataaaatatataaataaaaagaacgagatacagagacttgggg-tattagacctgactcaggtacaacctaaacggaaatacgtc 41421211  T
Q  217 gtgataaatcagatctagtagatcaa 242  Q
    |||||| |||||| | ||| ||||||    
T  41421212 gtgatatatcagaccaagtggatcaa 41421237  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 228
Target Start/End: Complemental strand, 41907440 - 41907329
Alignment:
Q  117 ttttttaggcaaaaggaaaaatatattaaataaaataaagagatacagagattgggggacattagacctggctccgctacaacccaaacgaaactacatc 216  Q
    ||||||||||||||   ||||||||||||||||||  || ||||||| |||||||||||||| ||||||| | | |  | ||||||||||||| |||| |    
T  41907440 ttttttaggcaaaatagaaaatatattaaataaaaagaaaagatacaaagattgggggacatcagacctgacccaggaataacccaaacgaaaatacagc 41907341  T
Q  217 gtgataaatcag 228  Q
     |||||||||||    
T  41907340 atgataaatcag 41907329  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 233
Target Start/End: Complemental strand, 1863738 - 1863630
Alignment:
Q  127 aaaaggaaaaatatattaaataaaataaagag-atacagagattggggg-acattagacctggctccgctacaacccaaacgaaactacatcgtgataaa 224  Q
    |||||||||||||||||||| |||| || | | ||| |||||||||||| |||||| ||||| ||| | ||||| |||||| ||| ||||| || |||||    
T  1863738 aaaaggaaaaatatattaaaaaaaaaaaggcgtataaagagattggggggacattaaacctgactcaggtacaatccaaaccaaaatacattgttataaa 1863639  T
Q  225 tcagatcta 233  Q
    ||| |||||    
T  1863638 tcaaatcta 1863630  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 186
Target Start/End: Complemental strand, 557897 - 557844
Alignment:
Q  134 aaaatatattaaataaaa-taaagagatacagagattgggggacattagacctg 186  Q
    |||||||| ||||||||| |||||||||| ||||| ||||||||||||| ||||    
T  557897 aaaatataataaataaaaataaagagatagagagactgggggacattaggcctg 557844  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 47721198 - 47721142
Alignment:
Q  148 aaaataaagagatacagagattgggggacattagacctggctccgctacaacccaaa 204  Q
    ||||||||||||||| |||| ||||||||||||| |||| | | | |||||||||||    
T  47721198 aaaataaagagatacggagactgggggacattaggcctgacccaggtacaacccaaa 47721142  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 33299440 - 33299393
Alignment:
Q  140 tattaaataaaat-aaagagatacagagattgggggacattagacctg 186  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||    
T  33299440 tattaaataaaaacaaagagatacagagattgggggacattagacctg 33299393  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 21007056 - 21007124
Alignment:
Q  139 atattaaataaaat-aaagagatacagagattgggggacattagacctggctccgctacaacccaaacga 207  Q
    |||||||||||||  ||||||||||||||||| |||| ||||||||||| ||| | ||||||||| ||||    
T  21007056 atattaaataaaaagaaagagatacagagatttgggg-cattagacctgactcaggtacaacccagacga 21007124  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 44742529 - 44742478
Alignment:
Q  117 ttttttaggcaaaa-ggaaaaatatattaaataaaataaagagatacagaga 167  Q
    |||||||||||||| ||| ||||||||||||||||||||| |||||||||||    
T  44742529 ttttttaggcaaaaaggataaatatattaaataaaataaaaagatacagaga 44742478  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 5533031 - 5533093
Alignment:
Q  126 caaaaggaaaaatatattaaat-aaaataaagagatacagagattgggggacattagacctggc 188  Q
    |||||||||||||||||||||| ||||||||||| |||||||  || |||||||||||||||||    
T  5533031 caaaaggaaaaatatattaaataaaaataaagaggtacagag-ctgtgggacattagacctggc 5533093  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 228
Target Start/End: Complemental strand, 26759768 - 26759656
Alignment:
Q  117 ttttttaggcaaaa--ggaaaaatatattaaataaaataaagagatacagagattgggggacattagacctggctccgctacaacccaaacgaaactaca 214  Q
    ||||||||||||||  | ||| |||||| ||||||||  |||||||||| ||| ||||| |||||| ||||| ||  |  | |||||||| |||| ||||    
T  26759768 ttttttaggcaaaatagaaaatatatataaaataaaaagaagagatacaaagactgggg-acattaaacctgacttaggaataacccaaatgaaaataca 26759670  T
Q  215 tcgtgataaatcag 228  Q
    ||||||||||||||    
T  26759669 tcgtgataaatcag 26759656  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 15309422 - 15309374
Alignment:
Q  128 aaaggaaaaatatattaaataaaa-taaagagatacagagattggggga 175  Q
    ||||| |||||||||||||||||| || ||||||||||||| |||||||    
T  15309422 aaagggaaaatatattaaataaaaatagagagatacagagactggggga 15309374  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 1764019 - 1764077
Alignment:
Q  146 ataaaataaagagatacagagattgggggacattagacctggctccgctacaacccaaa 204  Q
    |||||||||||||||||||||| ||||||||||||||| |  ||| | |||||||||||    
T  1764019 ataaaataaagagatacagagagtgggggacattagacgtaactcaggtacaacccaaa 1764077  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 35077822 - 35077873
Alignment:
Q  136 aatatattaaataaaataaagag-atacagagattgggggacattagacctg 186  Q
    ||||||||||||||||  ||||  ||||||||||||||||||||||||||||    
T  35077822 aatatattaaataaaaataagattatacagagattgggggacattagacctg 35077873  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 186
Target Start/End: Complemental strand, 31567058 - 31566996
Alignment:
Q  126 caaaaggaaaaatatattaaat-aaaataaagagatacag-agattgggggacattagacctg 186  Q
    |||||||| ||||||||||||| ||||||||||||||||| |||||  | |||||||||||||    
T  31567058 caaaaggagaaatatattaaataaaaataaagagatacagaagattatgtgacattagacctg 31566996  T

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