View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9980_low_29 (Length: 277)

Name: NF9980_low_29
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9980_low_29
NF9980_low_29
[»] chr1 (2 HSPs)
chr1 (16-260)||(24278921-24279165)
chr1 (180-260)||(24278404-24278483)
[»] scaffold0023 (1 HSPs)
scaffold0023 (180-260)||(148456-148536)
[»] chr6 (2 HSPs)
chr6 (180-260)||(11233885-11233965)
chr6 (180-260)||(8671463-8671544)
[»] chr5 (2 HSPs)
chr5 (180-260)||(38838756-38838837)
chr5 (219-260)||(40934902-40934943)
[»] chr3 (1 HSPs)
chr3 (180-260)||(18558880-18558961)
[»] chr8 (2 HSPs)
chr8 (204-260)||(3301777-3301834)
chr8 (213-260)||(25556799-25556846)
[»] chr7 (1 HSPs)
chr7 (213-260)||(360133-360180)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 24278921 - 24279165
Alignment:
Q  16 gagcagagaaaatgatattttaacaactttcaatctaacctgacaaattaacaataatcgagtctcgtgatatcagaggtgcctcatgtgcatgttgcat 115  Q
    |||||||| |||||||||||||| |||||||| ||   |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24278921 gagcagagcaaatgatattttaataactttcattcactcctgacaaattagcaataatcgagtctcgtgatatcagaggtgcctcatgtgcatgttgcat 24279020  T
Q  116 tacaatacccaatcagactatatttttgctcaagataaatttttatagaatcaacttccattatttaaatccaaactaattcgctcactccactatgtaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24279021 tacaatacccaatcagactatatttttgctcaagataaatttttatagaatcaacttccattatttaaatccaaactaatttgctcactccactatgtaa 24279120  T
Q  216 agttaatttgactataagatttattatccacatatgatgtatatg 260  Q
    || |||||||||||||||| |||||||| ||||||||||||||||    
T  24279121 agctaatttgactataagacttattatctacatatgatgtatatg 24279165  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 180 - 260
Target Start/End: Original strand, 24278404 - 24278483
Alignment:
Q  180 ttaaatccaaactaattcgctcactccactatgtaaagttaatttgactataagatttattatccacatatgatgtatatg 260  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||    
T  24278404 ttaaatccaaactaattcgctcactccactatgtaaagctaatttgactataagacttattat-cacatatgatgtatatg 24278483  T

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Target: scaffold0023 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 180 - 260
Target Start/End: Complemental strand, 148536 - 148456
Alignment:
Q  180 ttaaatccaaactaattcgctcactccactatgtaaagttaatttgactataagatttattatccacatatgatgtatatg 260  Q
    ||||||||||||||||||| ||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  148536 ttaaatccaaactaattcgatcattccactatgtaaagctaatttgactataagacttattatccacatatgatgtatatg 148456  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 180 - 260
Target Start/End: Complemental strand, 11233965 - 11233885
Alignment:
Q  180 ttaaatccaaactaattcgctcactccactatgtaaagttaatttgactataagatttattatccacatatgatgtatatg 260  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||    
T  11233965 ttaaatccacactaattcgctcactccactatgtaaagctaatttgaccataagacttattatccacatatgatgtatatg 11233885  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 180 - 260
Target Start/End: Complemental strand, 8671544 - 8671463
Alignment:
Q  180 ttaaatccaaactaattcgctcactccactatgtaaagttaa-tttgactataagatttattatccacatatgatgtatatg 260  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||| |||||||||||||||    
T  8671544 ttaaatccaaactaattcgctcactccactatgtaaagctaattttgactataagacttattatccgcatatgatgtatatg 8671463  T

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Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 180 - 260
Target Start/End: Complemental strand, 38838837 - 38838756
Alignment:
Q  180 ttaaatccaaactaattcgctcactccactatgtaaagttaa-tttgactataagatttattatccacatatgatgtatatg 260  Q
    |||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||    
T  38838837 ttaaatccaaactaattcgctcactctactatgtaaagctaattttgactataagacttattatccacatatgatgtatatg 38838756  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 40934943 - 40934902
Alignment:
Q  219 taatttgactataagatttattatccacatatgatgtatatg 260  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  40934943 taatttgactataagacttattatccacatatgatgtatatg 40934902  T

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Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 180 - 260
Target Start/End: Complemental strand, 18558961 - 18558880
Alignment:
Q  180 ttaaatccaaactaattcgctcactccactatgtaaagttaa-tttgactataagatttattatccacatatgatgtatatg 260  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||| |||||||||||    
T  18558961 ttaaatccaaactaattcgctcactccactatgtaaagctaattttgactataagacttattatccacatgtgatgtatatg 18558880  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 260
Target Start/End: Complemental strand, 3301834 - 3301777
Alignment:
Q  204 tccactatgtaaagttaattt-gactataagatttattatccacatatgatgtatatg 260  Q
    |||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||    
T  3301834 tccactatgtaaagctaattttgactataagacttattatccacatatgatgtatatg 3301777  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 25556846 - 25556799
Alignment:
Q  213 taaagttaatttgactataagatttattatccacatatgatgtatatg 260  Q
    ||||| ||||||| |||||||| |||||||||||||||||||||||||    
T  25556846 taaagctaatttgtctataagacttattatccacatatgatgtatatg 25556799  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 260
Target Start/End: Original strand, 360133 - 360180
Alignment:
Q  213 taaagttaatttgactataagatttattatccacatatgatgtatatg 260  Q
    ||||| ||||||| |||||||| |||||||||||||||||||||||||    
T  360133 taaagctaatttgtctataagacttattatccacatatgatgtatatg 360180  T

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