View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9980_low_3 (Length: 613)
Name: NF9980_low_3
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9980_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 189 - 603
Target Start/End: Complemental strand, 21018224 - 21017795
Alignment:
| Q |
189 |
gcatatagcacctgagtatctcttaactagaaggtcttcagaaaagatcgatgtttttgcatatggtgtgatgcttcttgaactaataactggaccgagg |
288 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21018224 |
gcatatagcacctgagtatctcttaactagaaggtcttcagaaaagatcgatgtttttgcatatggtgtgatgcttcttgaactaataactggaccgagg |
21018125 |
T |
|
| Q |
289 |
gcttctgacctagcacgtcttgccannnnnnnnnnnnnnnnnnnnttgcttgatttggtaggttttcctttaactataaatatgtttttagttgttgaac |
388 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21018124 |
gcttctgacctagcacgtcttgccaatgatgatgatgatgtgatgttgcttgatttggtaggttttcctttaactataaatatgtttttagttgttgaac |
21018025 |
T |
|
| Q |
389 |
aaatttttagttaaatcctgcattaaacactgcggcatgcattaatttcttcacgatgttctatacgctcaagcatcgttatttagtgtatcatcattcc |
488 |
Q |
| |
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|||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21018024 |
aaatttttagttaaatcctgtattcaacactgcggcatgcattaatttcttcaatatgttctatacgctcaagcatcattatttagtgtatcatcattcc |
21017925 |
T |
|
| Q |
489 |
tttctcaatacttgat---------------attttgtgaaagtttcttcaatgaccaaaactttacgttttactaatttttgaagggaaggttactttt |
573 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||| |
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| T |
21017924 |
tttctcaatacttgatatttgttttattgatattttgtgaaagtttcttcaatgaccaaaactttacgttttactaattttttaagggagggttgctttt |
21017825 |
T |
|
| Q |
574 |
attttgcttagatatgttttggtccctatg |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
21017824 |
attttgcttagatatgttttggtccctatg |
21017795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 92 - 311
Target Start/End: Original strand, 1435981 - 1436200
Alignment:
| Q |
92 |
atgaggaattggaagcagttgttggagattttggttatgcaatgcttatggattacaaagatacccatgatactactgctgtttttggtacggttgggca |
191 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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|
| T |
1435981 |
atgaggaatttgaagcaattgttggagattttggttatgcaatgcttatggattacaaagatacccatgatactactgctgtctttggtacgattgggca |
1436080 |
T |
|
| Q |
192 |
tatagcacctgagtatctcttaactagaaggtcttcagaaaagatcgatgtttttgcatatggtgtgatgcttcttgaactaataactggaccgagggct |
291 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1436081 |
tatagcacctgaatatctcttaactggaaggtcttcagaaaagaccgatgtttttgcatatggtgtgatgcttcttgaactaataactggaccgagggct |
1436180 |
T |
|
| Q |
292 |
tctgacctagcacgtcttgc |
311 |
Q |
| |
|
||||| |||||||||||||| |
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|
| T |
1436181 |
tctgatctagcacgtcttgc |
1436200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 92 - 313
Target Start/End: Original strand, 1429371 - 1429592
Alignment:
| Q |
92 |
atgaggaattggaagcagttgttggagattttggttatgcaatgcttatggattacaaagatacccatgatactactgctgtttttggtacggttgggca |
191 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| |||| |||| |||||||||||||||||||||||||| |||||||||||| ||||||| |||| || |
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|
| T |
1429371 |
atgaggaatttgaagcagttgtgggagatttcggtttagcaaagcttatggattacaaagatacccatgttactactgctgtccgtggtacgattggaca |
1429470 |
T |
|
| Q |
192 |
tatagcacctgagtatctcttaactagaaggtcttcagaaaagatcgatgtttttgcatatggtgtgatgcttcttgaactaataactggaccgagggct |
291 |
Q |
| |
|
||||||||||||||| || | |||| ||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
1429471 |
tatagcacctgagtacctgtcaactggaaagtcttcagaaaagactgatgtttttggatatggtgtgatgcttcttgaactaataactggacaaagggct |
1429570 |
T |
|
| Q |
292 |
tctgacctagcacgtcttgcca |
313 |
Q |
| |
|
| ||| |||||||||||||||| |
|
|
| T |
1429571 |
tttgatctagcacgtcttgcca |
1429592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 92 - 312
Target Start/End: Original strand, 1448804 - 1449024
Alignment:
| Q |
92 |
atgaggaattggaagcagttgttggagattttggttatgcaatgcttatggattacaaagatacccatgatactactgctgtttttggtacggttgggca |
191 |
Q |
| |
|
|||| ||||| | |||||||||||||||||| |||| |||| |||||||| ||||||||||||||||| |||||||||||| ||||| ||||||| |
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|
| T |
1448804 |
atgatgaatttgtagcagttgttggagatttcggtttagcaaggcttatggcttacaaagatacccatgtcactactgctgttcaaggtacacttgggca |
1448903 |
T |
|
| Q |
192 |
tatagcacctgagtatctcttaactagaaggtcttcagaaaagatcgatgtttttgcatatggtgtgatgcttcttgaactaataactggaccgagggct |
291 |
Q |
| |
|
|||| |||||||||| || | ||| ||| |||||||||||||| |||||||||| ||||||| ||||||||||||||| | |||||||| ||||||| |
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|
| T |
1448904 |
tataccacctgagtacctgtcaaccggaaagtcttcagaaaagactgatgtttttggatatggtacgatgcttcttgaactgacaactggacagagggct |
1449003 |
T |
|
| Q |
292 |
tctgacctagcacgtcttgcc |
312 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
1449004 |
tttgacctagcacgtcttgcc |
1449024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 92 - 312
Target Start/End: Original strand, 1441400 - 1441620
Alignment:
| Q |
92 |
atgaggaattggaagcagttgttggagattttggttatgcaatgcttatggattacaaagatacccatgatactactgctgtttttggtacggttgggca |
191 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||| |||| |||||||| ||||||||||||||||| |||||||||||| ||||| ||||||| |
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|
| T |
1441400 |
atgaggaatttgaagcagttgttggagatttcggtttagcaaagcttatggcttacaaagatacccatgtcactactgctgttcgaggtacacttgggca |
1441499 |
T |
|
| Q |
192 |
tatagcacctgagtatctcttaactagaaggtcttcagaaaagatcgatgtttttgcatatggtgtgatgcttcttgaactaataactggaccgagggct |
291 |
Q |
| |
|
|||| | |||||||| || | ||| ||| |||||||||||||| |||||||||| |||||| ||||||||| ||||| | ||||||| ||||||| |
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|
| T |
1441500 |
tataccccctgagtacctgtcaaccggaaagtcttcagaaaagactgatgtttttggatatggcacgatgcttctagaactgacaactggaaagagggct |
1441599 |
T |
|
| Q |
292 |
tctgacctagcacgtcttgcc |
312 |
Q |
| |
|
| ||| ||||||||||||||| |
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|
| T |
1441600 |
tttgatctagcacgtcttgcc |
1441620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 92 - 292
Target Start/End: Original strand, 1455560 - 1455760
Alignment:
| Q |
92 |
atgaggaattggaagcagttgttggagattttggttatgcaatgcttatggattacaaagatacccatgatactactgctgtttttggtacggttgggca |
191 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||| |||| |||||||| ||||||||||||||||| |||||||||||| ||||| ||||| | |
|
|
| T |
1455560 |
atgaggaatttgaagcagttgttggagatttcggtttagcaaagcttatggcttacaaagatacccatgtcactactgctgttcaaggtacacttgggta |
1455659 |
T |
|
| Q |
192 |
tatagcacctgagtatctcttaactagaaggtcttcagaaaagatcgatgtttttgcatatggtgtgatgcttcttgaactaataactggaccgagggct |
291 |
Q |
| |
|
||||||||| ||||| || | ||| ||| |||||||||||||| ||||||| || ||||||| |||||||| |||||||||||||||||| ||| ||| |
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|
| T |
1455660 |
tatagcacccgagtacctgtcaacaggaaagtcttcagaaaagactgatgtttatggatatggtatgatgctttttgaactaataactggacagagtgct |
1455759 |
T |
|
| Q |
292 |
t |
292 |
Q |
| |
|
| |
|
|
| T |
1455760 |
t |
1455760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 21018311 - 21018222
Alignment:
| Q |
19 |
ccaactcctccactttagccaaatctctccaccaaattgaagccaaacgggtcacaccctccccatacggcccatgaggaattggaagca |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21018311 |
ccaactcctccactttagccaaatctctccaccaaattgaagccaaacgggacacaccctccccatgcggcccatgaggaattggaagca |
21018222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 422 - 508
Target Start/End: Original strand, 1429725 - 1429811
Alignment:
| Q |
422 |
ggcatgcattaatttcttcacgatgttctatacgctcaagcatcgttatttagtgtatcatcattcctttctcaatacttgatattt |
508 |
Q |
| |
|
|||||||||| || ||||||| |||||||||| ||||||||||| |||| ||||||||||| || |||| |||||||||| |||||| |
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|
| T |
1429725 |
ggcatgcattgatctcttcacaatgttctatatgctcaagcatcattatctagtgtatcattatcccttgctcaatacttaatattt |
1429811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 390
Target Start/End: Original strand, 1436217 - 1436273
Alignment:
| Q |
334 |
ttgcttgatttggtaggttttcctttaactataaatatgtttttagttgttgaacaa |
390 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||| ||||| ||||||||| |
|
|
| T |
1436217 |
ttgcttgattgggtaggttttcctttaactttaaatatgtcattagtagttgaacaa |
1436273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 440
Target Start/End: Original strand, 1436299 - 1436348
Alignment:
| Q |
391 |
atttttagttaaatcctgcattaaacactgcggcatgcattaatttcttc |
440 |
Q |
| |
|
|||||||||||||| |||| | ||||||| ||||||||||||||||||| |
|
|
| T |
1436299 |
atttttagttaaattctgcctccaacactgtggcatgcattaatttcttc |
1436348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 423 - 482
Target Start/End: Original strand, 1441716 - 1441773
Alignment:
| Q |
423 |
gcatgcattaatttcttcacgatgttctatacgctcaagcatcgttatttagtgtatcat |
482 |
Q |
| |
|
||||| |||||| |||||| ||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
1441716 |
gcatgaattaatctcttcataatgttctatac--tcaagcatcattatttagtgtatcat |
1441773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 136 - 283
Target Start/End: Complemental strand, 43826538 - 43826391
Alignment:
| Q |
136 |
cttatggattacaaagatacccatgatactactgctgtttttggtacggttgggcatatagcacctgagtatctcttaactagaaggtcttcagaaaaga |
235 |
Q |
| |
|
|||||||||||||| || ||||||| ||| ||||||||| ||||| ||||||||||||| || ||||| || | ||| | | ||||||||| || | |
|
|
| T |
43826538 |
cttatggattacaaggacacccatgttacaactgctgttcggggtacaattgggcatatagctcccgagtacctatctactggcaagtcttcagagaaaa |
43826439 |
T |
|
| Q |
236 |
tcgatgtttttgcatatggtgtgatgcttcttgaactaataactggac |
283 |
Q |
| |
|
|||||||||| |||||| | ||||||||||| || |||||||||| |
|
|
| T |
43826438 |
ctgatgtttttggttatggtatcatgcttcttgagcttataactggac |
43826391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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