View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9980_low_30 (Length: 271)
Name: NF9980_low_30
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9980_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 54267605 - 54267839
Alignment:
| Q |
15 |
ggaggagtatattggatccttaagaaggtattaatcaaacataatttctttcattatatatatcagcaagaaaaaatttgcaaatattaatcatagctta |
114 |
Q |
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| T |
54267605 |
ggaggagtatattggatccttaagaaggtattaatcaaacataatttctttcattatatatatcagcatgaaaaaatttgcaaatattaatcatagctta |
54267704 |
T |
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| Q |
115 |
tttttactaaaaattacagaaaaagcagtggtttttcacggggtgtatctaaatacagaggtgtagcaaggtatatattagctagttcttcttatacatc |
214 |
Q |
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| T |
54267705 |
tttttactaaaaattacaggaaaagcagtggtttttcacggggtgtatctaaatacagaggtgtagcaaggtatatattagctagttcttcttatacatc |
54267804 |
T |
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| Q |
215 |
aaatttctttgatcaacttttgtttatatttaaga |
249 |
Q |
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| T |
54267805 |
aaatttctttgatcaatttttgcttatatttaaga |
54267839 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 25050806 - 25050858
Alignment:
| Q |
135 |
aaaagcagtggtttttcacggggtgtatctaaatacagaggtgtagcaaggta |
187 |
Q |
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| T |
25050806 |
aaaagcagtggtttttcgcggggagtttctaaatacaggggtgtcgcaaggta |
25050858 |
T |
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