View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9980_low_31 (Length: 269)
Name: NF9980_low_31
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9980_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 39882174 - 39881924
Alignment:
| Q |
1 |
tgagatgtatgaatgatgagaacgtggagtgagaatgttcatttgtttgttcttggtagagtttgattttgtgaagttggaaagtttgtgaagtgtttgt |
100 |
Q |
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| T |
39882174 |
tgagatgtatgaatgatgagaacgtggagtgagaatgttcatttgtttgttcttggtagagtttgattttgtgaagttggaaagtttgtgaagtgtttgt |
39882075 |
T |
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| Q |
101 |
acgtgtgtaaatgagaatttgaatataaatggaaagttgagagaatatgggaggagatggtgtgagcataagggcctgatagatggttgttgcatttgct |
200 |
Q |
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| T |
39882074 |
acgtgcgtaaatgagaatttgaatataaatggaaagttgagagaatatgggaggagatcgtgtgagcataaggacctgatagatggttgttgcatttgct |
39881975 |
T |
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| Q |
201 |
gatgagtcatgcaagatattagaaaagaagaaggaagtgggttagttttct |
251 |
Q |
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| T |
39881974 |
gatgagtcatgcgagatattagaaaagaagaaggaagtgggttagttttct |
39881924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 22640788 - 22640913
Alignment:
| Q |
1 |
tgagatgtatgaatgatgagaacgtggagtgagaatgttcatttgtttgttcttggtagagtttgattttgtgaagt------tggaaagtttgtgaagt |
94 |
Q |
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|||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
22640788 |
tgagatgtatgaatgacaagaaagtggagtgagagtgttcatttgtttgttcttggtagagtttgattttgtgaagttgggaatgggaagtttgtgaagt |
22640887 |
T |
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| Q |
95 |
gtttgtacgtgtgtaaatgagaattt |
120 |
Q |
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| T |
22640888 |
gtttgtaagtctgtaactgagaattt |
22640913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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