View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9980_low_34 (Length: 264)
Name: NF9980_low_34
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9980_low_34 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 8459308 - 8459045
Alignment:
| Q |
1 |
gctttatccaatgccaaaactttcttcattgcttcattgacatcagcttcactaaaattcccaagagcaagctttgttcttacctctccttgaagctgct |
100 |
Q |
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| T |
8459308 |
gctttatccaatgccaaaactttcttcattgcttcattgacatcagcttcactaaaattcccaagagcaagctttgttcttacctctccttgaagctgct |
8459209 |
T |
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| Q |
101 |
taaaaaatctagtagcatttctttgttcttctgcaagctgcgacggctgaactttgttcatgaacagaagtaaaccagttgcagccatgtaaagaattgt |
200 |
Q |
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| T |
8459208 |
taaaaaatctagtagcatttctttgttcttctgcaagctgcgatggctgaactttgttcatgaacagaagtaaaccagttgcagccatgtaaagaattgt |
8459109 |
T |
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| Q |
201 |
ggaagaaactttcaatgctacaagtgatgcttcacctccggtcgaagcaacggctgcaagacca |
264 |
Q |
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| T |
8459108 |
ggaagaaactttcaatgctacaagtgatgcttcacctccggtcgaagcaaccgctgcaagacca |
8459045 |
T |
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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 1617810 - 1617908
Alignment:
| Q |
114 |
agcatttctttgttcttctgcaagctgcgacggctgaactttgttcatgaacagaagtaaaccagttgcagccatgtaaagaattgtggaagaaacttt |
212 |
Q |
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| T |
1617810 |
agcatttccctgttcctctacaagctgggatggctggattttgttcatgaacagaagtaaagcagttgcagacatataaagaattgtggaagaaacttt |
1617908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 18790820 - 18790886
Alignment:
| Q |
114 |
agcatttctttgttcttctgcaagctgcgacggctgaactttgttcatgaacagaagtaaaccagtt |
180 |
Q |
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| T |
18790820 |
agcatttccctgttcctctacaagctgtgatggctggattttgtttatgaacagaagtaaaccagtt |
18790886 |
T |
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