View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9980_low_37 (Length: 250)

Name: NF9980_low_37
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9980_low_37
NF9980_low_37
[»] scaffold0007 (1 HSPs)
scaffold0007 (3-243)||(189542-189782)
[»] chr8 (2 HSPs)
chr8 (50-243)||(9181942-9182139)
chr8 (50-243)||(11626134-11626331)
[»] chr6 (3 HSPs)
chr6 (50-243)||(10160166-10160363)
chr6 (60-145)||(16862015-16862100)
chr6 (76-145)||(21731065-21731134)
[»] chr7 (7 HSPs)
chr7 (27-205)||(41146468-41146646)
chr7 (27-205)||(12351925-12352103)
chr7 (30-220)||(29843310-29843500)
chr7 (27-145)||(31801256-31801374)
chr7 (27-145)||(46598573-46598691)
chr7 (69-187)||(18222719-18222837)
chr7 (27-145)||(512626-512744)
[»] chr5 (5 HSPs)
chr5 (27-205)||(23149983-23150161)
chr5 (60-171)||(42577985-42578096)
chr5 (51-187)||(7273753-7273889)
chr5 (24-145)||(13022106-13022227)
chr5 (24-145)||(13093630-13093751)
[»] chr4 (3 HSPs)
chr4 (27-205)||(32498260-32498438)
chr4 (30-124)||(54422601-54422695)
chr4 (48-84)||(3575031-3575067)
[»] chr3 (10 HSPs)
chr3 (27-188)||(2500403-2500564)
chr3 (60-171)||(52966076-52966187)
chr3 (64-171)||(4755674-4755781)
chr3 (46-145)||(51141347-51141446)
chr3 (24-198)||(6864436-6864609)
chr3 (48-166)||(2332392-2332509)
chr3 (48-130)||(24596091-24596173)
chr3 (48-84)||(22005361-22005397)
chr3 (48-84)||(22012878-22012914)
chr3 (48-84)||(25898261-25898297)
[»] chr1 (9 HSPs)
chr1 (30-221)||(50181535-50181726)
chr1 (25-145)||(20128409-20128529)
chr1 (46-145)||(14647395-14647494)
chr1 (63-145)||(12460007-12460089)
chr1 (60-170)||(51492989-51493099)
chr1 (60-188)||(44138462-44138590)
chr1 (29-187)||(27644547-27644705)
chr1 (63-145)||(13189550-13189632)
chr1 (60-133)||(27465618-27465691)
[»] scaffold0703 (1 HSPs)
scaffold0703 (60-145)||(896-981)
[»] chr2 (2 HSPs)
chr2 (76-145)||(4243154-4243223)
chr2 (63-127)||(647323-647386)


Alignment Details
Target: scaffold0007 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 3 - 243
Target Start/End: Original strand, 189542 - 189782
Alignment:
Q  3 gatggtctaagagttggacgattacggatccacggcatactcgatacattaatttgggaaccatcaccaatcatccatctatgtcccaaggtaagtaaag 102  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  189542 gatggtctaagagttggacgattacggatccacgacatactcgacacattaatttgggaaccatcaccaatcatccatctatgtcccaaggtgagtaaag 189641  T
Q  103 attgagtactccaaaaactcctccatgtataacctggattatgtcctagattggcatacaaaaaatcccattgcgggaaatatttaaatttgaggatcct 202  Q
    ||||||||||| ||| ||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  189642 attgagtactcaaaagactcctccatgtaaaacttggattatgtcctagattggcatacgaaaaatcccattgcgggaaatatttaaatttgaggatctt 189741  T
Q  203 tgatgatagagaggttgagataagagcttccacctttgctt 243  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  189742 tgataatagagaggttgagataagagcttccacctttgctt 189782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 50 - 243
Target Start/End: Original strand, 9181942 - 9182139
Alignment:
Q  50 attaatttgggaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctccatgtataacctggattatgtcct 149  Q
    ||||||||| ||||||||||| ||| |||||||||| |||||||||||||||||||| |||||||| | ||||||||||||||||| ||||||||| ||     
T  9181942 attaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatggccg 9182041  T
Q  150 agattggcatacaaaaaatcccattgcgggaaatatttaaatttgaggatccttgatgatagagaggttga----gataagagcttccacctttgctt 243  Q
    || ||||||| ||||||||||| | ||||| | ||||||  ||||||||||||||||  || |||||||||    |||||||| ||||| ||||||||    
T  9182042 aggttggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagtcggataagagtttccaactttgctt 9182139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 50 - 243
Target Start/End: Complemental strand, 11626331 - 11626134
Alignment:
Q  50 attaatttgggaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctccatgtataacctggattatgtcct 149  Q
    ||||||||| ||||||||||| ||| |||||||||| |||||||||||||||||||| |||||||| | ||||||||||||||||| ||||||||| ||     
T  11626331 attaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatggccg 11626232  T
Q  150 agattggcatacaaaaaatcccattgcgggaaatatttaaatttgaggatccttgatgatagagaggttga----gataagagcttccacctttgctt 243  Q
    || ||||||| ||||||||||| | ||||| | ||||||  ||||||||||||||||  || |||||||||    |||||||| ||||| ||||||||    
T  11626231 aggttggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagtcggataagagtttccaactttgctt 11626134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 50 - 243
Target Start/End: Original strand, 10160166 - 10160363
Alignment:
Q  50 attaatttgggaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctccatgtataacctggattatgtcct 149  Q
    ||||||||| ||||||||||| ||| |||||||||| |||||||||||||||||||| |||||||| | ||||||||||||||||| ||||||||| ||     
T  10160166 attaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatggccg 10160265  T
Q  150 agattggcatacaaaaaatcccattgcgggaaatatttaaatttgaggatccttgatgatagagaggttga----gataagagcttccacctttgctt 243  Q
    || ||||||| ||||||||||| | ||||| | ||||||  ||||||||||||||||  || |||||||||    |||||||| ||||| ||||||||    
T  10160266 aggttggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagtcggataagagtttccaactttgctt 10160363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 145
Target Start/End: Complemental strand, 16862100 - 16862015
Alignment:
Q  60 gaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctccatgtataacctggattatg 145  Q
    ||||||| ||||||| |||||||||  ||||| |||||||| |||||  ||||||||| |||||||||||| || | |||||||||    
T  16862100 gaaccattaccaatcttccatctatagcccaacgtaagtaatgattggttactccaaagactcctccatgtgtagcttggattatg 16862015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 145
Target Start/End: Original strand, 21731065 - 21731134
Alignment:
Q  76 tccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctccatgtataacctggattatg 145  Q
    |||||||||| ||||||||||| | ||||||||||||||||| |||||||||| | || | |||||||||    
T  21731065 tccatctatggcccaaggtaagaagagattgagtactccaaagactcctccatatgtagcttggattatg 21731134  T

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Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 27 - 205
Target Start/End: Complemental strand, 41146646 - 41146468
Alignment:
Q  27 cggatccacggcatactcgatacattaatttgggaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctcc 126  Q
    |||||||| ||||||||| | ||||||||| ||||||| || |||||  |||| ||||| ||||||||||||||||||||||||||||| | ||||||||    
T  41146646 cggatccaaggcatactccacacattaattagggaaccgtctccaattttccacctatggcccaaggtaagtaaagattgagtactccatagactcctcc 41146547  T
Q  127 atgtataacctggattatgtcctagattggcatacaaaaaatcccattgcgggaaatatttaaatttgaggatccttga 205  Q
    |||| |||| ||||||||| ||||||||||||| ||||||||||| | | || |||||||||  ||||||||| |||||    
T  41146546 atgtgtaacttggattatgacctagattggcatccaaaaaatcccttcggggaaaatatttagctttgaggattcttga 41146468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 27 - 205
Target Start/End: Original strand, 12351925 - 12352103
Alignment:
Q  27 cggatccacggcatactcgatacattaatttgggaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctcc 126  Q
    |||||||| ||||||||| | ||||||||||| || || || |||||  |||| ||||| ||||||||||||||||||||||||||||| | ||||||||    
T  12351925 cggatccaaggcatactccacacattaatttgagagccgtctccaattttccagctatggcccaaggtaagtaaagattgagtactccatagactcctcc 12352024  T
Q  127 atgtataacctggattatgtcctagattggcatacaaaaaatcccattgcgggaaatatttaaatttgaggatccttga 205  Q
    |||| |||| ||||||||| ||||||||||||| ||||||||||| | | || |||||||||  ||||||||| |||||    
T  12352025 atgtgtaacttggattatgacctagattggcatccaaaaaatcccttcggggaaaatatttagctttgaggattcttga 12352103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 220
Target Start/End: Complemental strand, 29843500 - 29843310
Alignment:
Q  30 atccacggcatactcgatacattaatttgggaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctccatg 129  Q
    ||||| ||||||||| | ||||||||||| ||| |||||| |||| |||||||||| |||||||||||||||| ||  |||||||| | | | |||| ||    
T  29843500 atccaaggcatactccacacattaatttgagaatcatcactaatcgtccatctatggcccaaggtaagtaaaggttttgtactccatatattgctccttg 29843401  T
Q  130 tataacctggattatgtcctagattggcatacaaaaaatcccattgcgggaaatatttaaatttgaggatccttgatgatagagaggttga 220  Q
    |||||| ||||||||| ||||| ||||||| ||||||||||| |  ||  |||||||||  ||  | ||||||||||| || |||||||||    
T  29843400 tataacttggattatgacctaggttggcatccaaaaaatcccttctcgaaaaatatttagcttccaagatccttgatggtaaagaggttga 29843310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 145
Target Start/End: Complemental strand, 31801374 - 31801256
Alignment:
Q  27 cggatccacggcatactcgatacattaatttgggaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctcc 126  Q
    |||||||||||||||||| | |||||||| |  |||||||| |||||| |||||||||| ||||| ||||||||||||||||||||||| || |||||||    
T  31801374 cggatccacggcatactccacacattaatcttagaaccatctccaatcttccatctatggcccaaagtaagtaaagattgagtactccataagctcctcc 31801275  T
Q  127 atgtataacctggattatg 145  Q
    | ||||| | |||||||||    
T  31801274 aagtatagcttggattatg 31801256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 145
Target Start/End: Complemental strand, 46598691 - 46598573
Alignment:
Q  27 cggatccacggcatactcgatacattaatttgggaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctcc 126  Q
    |||||||||||||||||| | |||||||| |  |||||||| |||||| |||||||||| ||||| ||||||||||||||||||||||| || |||||||    
T  46598691 cggatccacggcatactccacacattaatcttagaaccatctccaatcttccatctatggcccaaagtaagtaaagattgagtactccataagctcctcc 46598592  T
Q  127 atgtataacctggattatg 145  Q
    | ||||| | |||||||||    
T  46598591 aggtatagcttggattatg 46598573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 187
Target Start/End: Original strand, 18222719 - 18222837
Alignment:
Q  69 ccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctccatgtataacctggattatgtcctagattggcatacaaaaaat 168  Q
    |||||| |||||||||| |||||||||||||| |||||| ||||||||| ||||||||| ||||| | ||||||||| || |||  ||||| ||| ||||    
T  18222719 ccaatcttccatctatgccccaaggtaagtaatgattgaatactccaaagactcctccaagtatagcttggattatggccgagagaggcatccaagaaat 18222818  T
Q  169 cccattgcgggaaatattt 187  Q
    ||| | |||||||||||||    
T  18222819 cccttcgcgggaaatattt 18222837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 145
Target Start/End: Complemental strand, 512744 - 512626
Alignment:
Q  27 cggatccacggcatactcgatacattaatttgggaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctcc 126  Q
    ||||||||||| |||||| | |||||||| |  ||||||||  || || |||||||||| ||||| ||||||||||||||||||||||| || ||||| |    
T  512744 cggatccacggaatactccacacattaatcttagaaccatctacattcttccatctatggcccaaagtaagtaaagattgagtactccataagctccttc 512645  T
Q  127 atgtataacctggattatg 145  Q
    | ||||| | |||||||||    
T  512644 aggtatagcttggattatg 512626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 27 - 205
Target Start/End: Complemental strand, 23150161 - 23149983
Alignment:
Q  27 cggatccacggcatactcgatacattaatttgggaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctcc 126  Q
    |||||||| ||||||||| | ||||||||||| ||||| || |||||  |||| ||||| ||||||||||||||||||||||||||||| | ||||||||    
T  23150161 cggatccaaggcatactccacacattaatttgagaaccgtctccaattttccacctatggcccaaggtaagtaaagattgagtactccatagactcctcc 23150062  T
Q  127 atgtataacctggattatgtcctagattggcatacaaaaaatcccattgcgggaaatatttaaatttgaggatccttga 205  Q
    |||| |||| ||||||||| ||||||||||||| ||||||||||| | | || |||||||||  ||||||||| |||||    
T  23150061 atgtgtaacttggattatgacctagattggcatccaaaaaatcccttcggggaaaatatttagctttgaggattcttga 23149983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 60 - 171
Target Start/End: Original strand, 42577985 - 42578096
Alignment:
Q  60 gaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctccatgtataacctggattatgtcctagattggcat 159  Q
    |||||||| |||||| |||||||||| ||||||||||||||||||||||| ||||||| |||||||||||| || | ||||||||| || |||  |||||    
T  42577985 gaaccatctccaatcttccatctatgacccaaggtaagtaaagattgagtgctccaaagactcctccatgtgtagcttggattatggccaagaggggcat 42578084  T
Q  160 acaaaaaatccc 171  Q
     ||| |||||||    
T  42578085 ccaagaaatccc 42578096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 187
Target Start/End: Complemental strand, 7273889 - 7273753
Alignment:
Q  51 ttaatttgggaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctccatgtataacctggattatgtccta 150  Q
    ||||||| ||||||||| | |||| |||||| ||| |||||||||||||||  ||| ||||||||||  || |||||||| || | ||||||||| || |    
T  7273889 ttaattttggaaccatctctaatcttccatccatgacccaaggtaagtaaatgttgtgtactccaaaggcttctccatgtgtagcttggattatggccga 7273790  T
Q  151 gattggcatacaaaaaatcccattgcgggaaatattt 187  Q
    ||  ||||| ||| ||||||| | | |||||||||||    
T  7273789 gagaggcatccaagaaatcccttcgtgggaaatattt 7273753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 145
Target Start/End: Original strand, 13022106 - 13022227
Alignment:
Q  24 ttacggatccacggcatactcgatacattaatttgggaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcc 123  Q
    ||||||||||| |||||| || | ||||||||||  | ||| ||||||||  |||||||||  ||||| ||||| |||  |||||||||||||| | |||    
T  13022106 ttacggatccaaggcatattccaaacattaattttcgtaccgtcaccaattttccatctataacccaaagtaagaaaatgttgagtactccaaagattcc 13022205  T
Q  124 tccatgtataacctggattatg 145  Q
    |||| ||| | | |||||||||    
T  13022206 tccaagtaaagcttggattatg 13022227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 145
Target Start/End: Original strand, 13093630 - 13093751
Alignment:
Q  24 ttacggatccacggcatactcgatacattaatttgggaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcc 123  Q
    ||||||||||| |||||| || | ||||||||||  | ||| ||||||||  |||||||||  ||||| ||||| |||  |||||||||||||| | |||    
T  13093630 ttacggatccaaggcatattccacacattaattttcgtaccgtcaccaattttccatctataacccaaagtaagcaaatgttgagtactccaaagattcc 13093729  T
Q  124 tccatgtataacctggattatg 145  Q
    |||| ||| | | |||||||||    
T  13093730 tccaagtaaagcttggattatg 13093751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 27 - 205
Target Start/End: Complemental strand, 32498438 - 32498260
Alignment:
Q  27 cggatccacggcatactcgatacattaatttgggaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctcc 126  Q
    |||||||| ||||||||| | ||||||||| ||||||| || |||||  |||| ||||| ||||||||||||||||||||||||||||| | ||||||||    
T  32498438 cggatccaaggcatactccacacattaattagggaaccgtctccaattttccacctatggcccaaggtaagtaaagattgagtactccatagactcctcc 32498339  T
Q  127 atgtataacctggattatgtcctagattggcatacaaaaaatcccattgcgggaaatatttaaatttgaggatccttga 205  Q
    |||| |||| ||||||||| ||||||||||||| ||||||||||| | | || |||||||||  ||||||||| |||||    
T  32498338 atgtgtaacttggattatgacctagattggcatccaaaaaatcccttcggggaaaatatttagctttgaggattcttga 32498260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 54422601 - 54422695
Alignment:
Q  30 atccacggcatactcgatacattaatttgggaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcct 124  Q
    ||||| ||||||||| | | ||||||||  || |||||||| ||| |||||||||| ||||||||||| | |||||| | |||||| | ||||||    
T  54422601 atccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggcactccatagactcct 54422695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 3575031 - 3575067
Alignment:
Q  48 acattaatttgggaaccatcaccaatcatccatctat 84  Q
    |||||||||||||||||||| |||||| |||||||||    
T  3575031 acattaatttgggaaccatcgccaatcttccatctat 3575067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 27 - 188
Target Start/End: Original strand, 2500403 - 2500564
Alignment:
Q  27 cggatccacggcatactcgatacattaatttgggaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctcc 126  Q
    |||||||| ||||||||| | ||||||||||| || || || |||||  |||| ||||| ||||||||||||||||||||||||||||| | ||||||||    
T  2500403 cggatccaaggcatactccacacattaatttgagagccgtctccaattttccacctatggcccaaggtaagtaaagattgagtactccatagactcctcc 2500502  T
Q  127 atgtataacctggattatgtcctagattggcatacaaaaaatcccattgcgggaaatattta 188  Q
    |||| |||| ||||||||| |||||||||||||  |||||||||| | | || |||||||||    
T  2500503 atgtgtaacttggattatggcctagattggcatctaaaaaatcccttcggggaaaatattta 2500564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 60 - 171
Target Start/End: Original strand, 52966076 - 52966187
Alignment:
Q  60 gaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctccatgtataacctggattatgtcctagattggcat 159  Q
    |||||||| |||||| |||||||||| ||||||||||||||||||||||| ||||||| |||||||||||| || | ||||||||| || |||  |||||    
T  52966076 gaaccatctccaatcttccatctatgacccaaggtaagtaaagattgagtgctccaaagactcctccatgtgtagcttggattatggccaagaggggcat 52966175  T
Q  160 acaaaaaatccc 171  Q
     ||| |||||||    
T  52966176 ccaagaaatccc 52966187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 4755674 - 4755781
Alignment:
Q  64 catcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctccatgtataacctggattatgtcctagattggcatacaa 163  Q
    ||||||||||| |||||||||| || | | ||||||||  ||| |||||||||| ||||||||||||||| | ||||||||  || || ||||||| |||    
T  4755674 catcaccaatcttccatctatggcctatgataagtaaattttgggtactccaaagactcctccatgtatagcttggattatagccaaggttggcatccaa 4755773  T
Q  164 aaaatccc 171  Q
    ||||||||    
T  4755774 aaaatccc 4755781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 145
Target Start/End: Original strand, 51141347 - 51141446
Alignment:
Q  46 atacattaatttgggaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctccatgtataacctggattatg 145  Q
    ||||||| ||||  |||||||| |||||| |||||||||| ||||||||||| | | ||||||||||||||| | | |||||||| |||| |||||||||    
T  51141347 atacatttatttttgaaccatctccaatcttccatctatgacccaaggtaagcagatattgagtactccaaagaattctccatgtgtaacttggattatg 51141446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 198
Target Start/End: Complemental strand, 6864609 - 6864436
Alignment:
Q  24 ttacggatccacggcatactcgatacattaatttgggaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcc 123  Q
    ||||||||||| ||||||||| | ||||| |||| | |||||||||| ||| ||| |||| | || | ||||||||||  |||  ||||||||  |   |    
T  6864609 ttacggatccatggcatactccacacattgatttag-aaccatcaccgatcttccttctaaggcctatggtaagtaaattttggatactccaatgatggc 6864511  T
Q  124 tccatgtataacctggattatgtcctagattggcatacaaaaaatcccattgcgggaaatatttaaatttgagga 198  Q
    |||| ||||| | |||||| || || || ||||||| ||||||||||| | | ||||||||||||| ||||||||    
T  6864510 tccacgtatagcttggattgtggccaaggttggcatccaaaaaatcccgtcgggggaaatatttaactttgagga 6864436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 166
Target Start/End: Complemental strand, 2332509 - 2332392
Alignment:
Q  48 acattaatttgggaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctccatgtataacctggattatgtc 147  Q
    ||||||||||  || |||||||||||  |||||||||    |||||||||||||  || ||||||||||| ||||||||| ||||| | ||||||||| |    
T  2332509 acattaattttagagccatcaccaattttccatctataatacaaggtaagtaaatgtt-agtactccaaagactcctccaagtatagcttggattatgac 2332411  T
Q  148 ctagattggcatacaaaaa 166  Q
    | |||| | ||| ||||||    
T  2332410 cgagatggacatccaaaaa 2332392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 24596091 - 24596173
Alignment:
Q  48 acattaatttgggaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctccatgt 130  Q
    ||||||||||  ||||||| | ||||| |||||| | |  |||| |||||||||||||| | |||||||| ||||||||||||    
T  24596091 acattaattttcgaaccattaacaatcttccatcgaaggtccaaagtaagtaaagattgggcactccaaagactcctccatgt 24596173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 22005361 - 22005397
Alignment:
Q  48 acattaatttgggaaccatcaccaatcatccatctat 84  Q
    |||||||||||||||||||| |||||| |||||||||    
T  22005361 acattaatttgggaaccatcgccaatcttccatctat 22005397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 22012878 - 22012914
Alignment:
Q  48 acattaatttgggaaccatcaccaatcatccatctat 84  Q
    |||||||||||||||||||| |||||| |||||||||    
T  22012878 acattaatttgggaaccatcgccaatcttccatctat 22012914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 25898297 - 25898261
Alignment:
Q  48 acattaatttgggaaccatcaccaatcatccatctat 84  Q
    |||||||||| |||||||||||||||| |||||||||    
T  25898297 acattaattttggaaccatcaccaatcttccatctat 25898261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 30 - 221
Target Start/End: Complemental strand, 50181726 - 50181535
Alignment:
Q  30 atccacggcatactcgatacattaatttgggaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctccatg 129  Q
    ||||| |||||| || | |||||| |||| ||||| |  |||||| |||||||||| || ||||||||||||||||| |||||||| | |||||||||||    
T  50181726 atccaaggcatattccacacattattttgagaaccgtttccaatcttccatctatggcctaaggtaagtaaagattgcgtactccatagactcctccatg 50181627  T
Q  130 tataacctggattatgtcctagattggcatacaaaaaatcccattgcgggaaatatttaaatttgaggatccttgatgatagagaggttgag 221  Q
    |||||| |||||| || || |||||||||| ||||||||||| | | || || ||||||  |||||||||||||||  ||||||||| ||||    
T  50181626 tataacttggattgtggccgagattggcatccaaaaaatcccttcggggaaagtatttagctttgaggatccttgagaatagagaggatgag 50181535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 145
Target Start/End: Complemental strand, 20128529 - 20128409
Alignment:
Q  25 tacggatccacggcatactcgatacattaatttgggaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcct 124  Q
    |||| ||||| ||||||||| | | ||||||||  |  |||||||||||| |||||||||||||||||||||| | |||||| |||||||| | ||||||    
T  20128529 tacgaatccaaggcatactccacatattaatttttgtgccatcaccaatcttccatctatgtcccaaggtaagaagagattgggtactccatagactcct 20128430  T
Q  125 ccatgtataacctggattatg 145  Q
    ||| || || | |||||||||    
T  20128429 ccaagtgtagcttggattatg 20128409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 145
Target Start/End: Complemental strand, 14647494 - 14647395
Alignment:
Q  46 atacattaatttgggaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctccatgtataacctggattatg 145  Q
    ||||||| ||||  |||||||| |||||  |||||||||| ||||||||||| | ||||||||||||||||| |||||||||| | || | |||||||||    
T  14647494 atacatttatttttgaaccatctccaattttccatctatgacccaaggtaagcagagattgagtactccaaagactcctccatatgtagcttggattatg 14647395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 12460007 - 12460089
Alignment:
Q  63 ccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctccatgtataacctggattatg 145  Q
    |||| ||||||| |||||||||  ||||| |||||||| ||||| |||||||||| ||||||||||||||| | |||||||||    
T  12460007 ccattaccaatcttccatctatagcccaacgtaagtaatgattgggtactccaaagactcctccatgtatagcttggattatg 12460089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 170
Target Start/End: Original strand, 51492989 - 51493099
Alignment:
Q  60 gaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctccatgtataacctggattatgtcctagattggcat 159  Q
    |||||| | |||||| |||||||||| ||||||||||||||||||||||| ||||||| || ||||||||  || | ||||||||| || |||  |||||    
T  51492989 gaaccagctccaatcttccatctatgacccaaggtaagtaaagattgagtgctccaaagacccctccatgcgtagcttggattatggccaagaggggcat 51493088  T
Q  160 acaaaaaatcc 170  Q
     ||| ||||||    
T  51493089 ccaagaaatcc 51493099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 188
Target Start/End: Complemental strand, 44138590 - 44138462
Alignment:
Q  60 gaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctccatgtataacctggattatgtcctagattggcat 159  Q
    ||||||| ||||||| ||||||||||||||||||||||||||  ||| | |||||| |  || ||||| || || | ||||||||| || |||  |||||    
T  44138590 gaaccataaccaatcttccatctatgtcccaaggtaagtaaatgttgtgcactccataggcttctccaggtgtagcttggattatggccgagaggggcat 44138491  T
Q  160 acaaaaaatcccattgcgggaaatattta 188  Q
     ||| ||||||| | ||||||||||||||    
T  44138490 ccaagaaatcccttcgcgggaaatattta 44138462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 187
Target Start/End: Original strand, 27644547 - 27644705
Alignment:
Q  29 gatccacggcatactcgatacattaatttgggaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctccat 128  Q
    |||||| |||||| || | ||||| |||| ||||||||  |||||| |||| || ||||| |||||||| ||    || |||||||||| |||||||||     
T  27644547 gatccaaggcatagtccacacatttattttggaaccatttccaatcttccacctgtgtcctaaggtaagcaagtgctgggtactccaaagactcctccaa 27644646  T
Q  129 gtataacctggattatgtcctagattggcatacaaaaaatcccattgcgggaaatattt 187  Q
    ||||| | ||||||||| || |||  ||||| ||| |||||||   |||||||||||||    
T  27644647 gtatagcttggattatgaccaagagaggcatccaagaaatccctacgcgggaaatattt 27644705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 13189550 - 13189632
Alignment:
Q  63 ccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctccatgtataacctggattatg 145  Q
    ||||| |||||  |||||||||  |||||||||||||||  |||||||||||||| ||| ||||| || || | |||||||||    
T  13189550 ccatctccaattttccatctataacccaaggtaagtaaatgttgagtactccaaagacttctccaagtgtagcttggattatg 13189632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 27465691 - 27465618
Alignment:
Q  60 gaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctccatgtata 133  Q
    ||||||||||||||  |||||  ||| |||||  |||||||||||||||||||||| | |||| |||| |||||    
T  27465691 gaaccatcaccaattttccattcatgacccaaaataagtaaagattgagtactccatagactcttccaagtata 27465618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0703 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0703
Description:

Target: scaffold0703; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 896 - 981
Alignment:
Q  60 gaaccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctccatgtataacctggattatg 145  Q
    ||||||| ||||||| |||||||||  ||||| |||||||| |||||  ||||||||| ||||||||||||||| | |||||||||    
T  896 gaaccattaccaatcttccatctatagcccaacgtaagtaatgattggatactccaaagactcctccatgtatagcttggattatg 981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 145
Target Start/End: Complemental strand, 4243223 - 4243154
Alignment:
Q  76 tccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctccatgtataacctggattatg 145  Q
    |||||||||| ||||| || || ||||||||||||||||| | ||||||||||||||| | |||||||||    
T  4243223 tccatctatgacccaaagtgagcaaagattgagtactccatagactcctccatgtatagcttggattatg 4243154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 647386 - 647323
Alignment:
Q  63 ccatcaccaatcatccatctatgtcccaaggtaagtaaagattgagtactccaaaaactcctcca 127  Q
    |||||||||||  ||||||||| |||||| ||||||||||||||||||||||| | |||||||||    
T  647386 ccatcaccaatt-tccatctatatcccaatgtaagtaaagattgagtactccatagactcctcca 647323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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