View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9980_low_39 (Length: 246)
Name: NF9980_low_39
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9980_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 18724970 - 18725058
Alignment:
| Q |
15 |
tgaatgtatagtgagtttcgggtgttcgaaattggttttcatcaaaattaaacttaacaaattcaaatgtgcgcaactgattacaatca |
103 |
Q |
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| T |
18724970 |
tgaatgtatagtgagtttcgggtgttcgaaattggttttcatccaaaataaacttaacaaattcaaatgtgcgcaactgcttacaatca |
18725058 |
T |
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Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 18725536 - 18725599
Alignment:
| Q |
113 |
acaaatcaaggaaaggtagcaggtgcaacttagatttcttctatcctgtttgaacactcatgct |
176 |
Q |
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| T |
18725536 |
acaaatcaaggaaaggtagcaggtgcaacttagatttcttctatcctgtttgaacactcatgct |
18725599 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 50992330 - 50992267
Alignment:
| Q |
113 |
acaaatcaaggaaaggtagcaggtgcaacttagatttcttctatcctgtttgaacactcatgct |
176 |
Q |
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| T |
50992330 |
acaaatcaaggaaaggtagcagctccaacctagatttcttgtctccagtttgaacactcatgct |
50992267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 19223055 - 19223105
Alignment:
| Q |
182 |
tgacatctaatgtagtt-ataaagatattttccaaaatgtactttaatttt |
231 |
Q |
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| T |
19223055 |
tgacatctaatgtagtttataaagaaattttttaaaatgtactttaatttt |
19223105 |
T |
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