View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9980_low_4 (Length: 543)

Name: NF9980_low_4
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9980_low_4
NF9980_low_4
[»] chr3 (10 HSPs)
chr3 (16-525)||(3427548-3428061)
chr3 (15-61)||(28703398-28703444)
chr3 (15-61)||(39253733-39253779)
chr3 (15-61)||(4222177-4222223)
chr3 (18-61)||(30311342-30311385)
chr3 (454-500)||(3367309-3367355)
chr3 (15-59)||(10445133-10445177)
chr3 (17-61)||(31520601-31520645)
chr3 (16-56)||(37788460-37788500)
chr3 (15-59)||(53412983-53413027)
[»] chr6 (2 HSPs)
chr6 (15-59)||(11306168-11306212)
chr6 (20-60)||(30127437-30127477)
[»] chr5 (8 HSPs)
chr5 (15-59)||(34984844-34984888)
chr5 (15-61)||(43442232-43442278)
chr5 (15-59)||(14285199-14285243)
chr5 (15-58)||(25627096-25627139)
chr5 (17-58)||(39327086-39327127)
chr5 (15-59)||(7918463-7918507)
chr5 (15-59)||(16773845-16773889)
chr5 (15-59)||(18595995-18596039)
[»] chr4 (10 HSPs)
chr4 (15-59)||(37274453-37274497)
chr4 (15-58)||(19680782-19680825)
chr4 (19-56)||(8325377-8325414)
chr4 (15-59)||(37109345-37109389)
chr4 (16-59)||(23377994-23378037)
chr4 (15-61)||(28635732-28635778)
chr4 (15-61)||(38869804-38869850)
chr4 (15-56)||(7949448-7949489)
chr4 (17-58)||(49576890-49576931)
chr4 (18-54)||(34661708-34661744)
[»] chr1 (11 HSPs)
chr1 (15-62)||(33700767-33700814)
chr1 (15-61)||(2799898-2799944)
chr1 (19-61)||(27223128-27223170)
chr1 (15-61)||(40810503-40810549)
chr1 (15-59)||(36371508-36371552)
chr1 (15-58)||(3265963-3266006)
chr1 (18-61)||(15786317-15786360)
chr1 (15-61)||(8177176-8177222)
chr1 (15-59)||(1247151-1247195)
chr1 (15-59)||(4566586-4566630)
chr1 (17-61)||(51814530-51814574)
[»] chr8 (4 HSPs)
chr8 (17-59)||(3624618-3624660)
chr8 (17-59)||(22193360-22193402)
chr8 (18-58)||(3058046-3058086)
chr8 (15-59)||(33017252-33017296)
[»] chr2 (5 HSPs)
chr2 (15-61)||(16918572-16918618)
chr2 (16-58)||(6859307-6859349)
chr2 (15-61)||(28194256-28194301)
chr2 (18-59)||(42327392-42327433)
chr2 (19-59)||(29503309-29503349)
[»] scaffold0194 (1 HSPs)
scaffold0194 (17-61)||(13042-13086)
[»] chr7 (9 HSPs)
chr7 (15-59)||(26459404-26459448)
chr7 (17-55)||(14058295-14058333)
chr7 (17-55)||(14368323-14368361)
chr7 (17-61)||(17041008-17041052)
chr7 (19-59)||(19553491-19553531)
chr7 (19-59)||(22760901-22760941)
chr7 (15-59)||(33222408-33222452)
chr7 (19-55)||(38374597-38374633)
chr7 (16-56)||(43215225-43215265)
[»] scaffold0299 (1 HSPs)
scaffold0299 (15-61)||(11564-11610)
[»] scaffold0291 (1 HSPs)
scaffold0291 (19-61)||(2468-2510)
[»] scaffold0180 (1 HSPs)
scaffold0180 (15-59)||(19956-20000)


Alignment Details
Target: chr3 (Bit Score: 451; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 16 - 525
Target Start/End: Original strand, 3427548 - 3428061
Alignment:
Q  16 agagagaatcgaacctaagaccttgaagatgagcacactcccagattgaatcatc-----gtttattacatccttactgattttaacacaaggatttttt 110  Q
    ||||||||||||| || ||||||||| || |||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||    
T  3427548 agagagaatcgaatctgagaccttgaggaggagcacactcccagattgaatcatcttcgtgtttattacatccttactgattttaacacaaggatttttt 3427647  T
Q  111 gttcattacatccttactcgttttaacacacgtttcaatgaacatagttgattacaacccttcttccttgaggttgaatcatttaagggtagtgaaaacc 210  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  3427648 gttcattacatccttactggttttaacacacgtttcaatgaacatagttgattacaacccttcttccttaaggttgaatcatttaagg-tagtgaaaacc 3427746  T
Q  211 tttgcttccaaaccttctaccactcttttaattatcctccaccacagtgcataattatgctatatataaccctaaatcttgtcaagtttatattggataa 310  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3427747 tttgcttccaaatcttctaccactcttttaattatcctccaccacagtgcataattatgctatatataaccctaaatcttgtcaagtctatattggataa 3427846  T
Q  311 agcatattcaaatgctttaatagggtaacaacaaacacttacacaattgaccaacaaaaatttcatcattcgatccaatattatagttcgcaattgcata 410  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3427847 agcatatacaaatgctttaatagggtaacaacaaacacttacacaattgaccaacaaaaatttcatcattcgatccaatattatagttcgcaattgcata 3427946  T
Q  411 tgaattagattacttatgtctttggttatttaattaacttctattgtaatttataataactaaagaaatgtttgattcttctttctgatccaactttact 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3427947 tgaattagattacttatgtctttggttatttaattaacttctattgtaatttataataactaaagaaatgtttgattcttctttctgatccaactttact 3428046  T
Q  511 tcactgtgtttatca 525  Q
    |||||||||||||||    
T  3428047 tcactgtgtttatca 3428061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 28703398 - 28703444
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcccagat 61  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||    
T  28703398 cagagagaatcgaacctgagaccttgaagaggagcacactcccagat 28703444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 39253779 - 39253733
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcccagat 61  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||    
T  39253779 cagagagaatcgaacctgagaccttgaagaggagcacactcccagat 39253733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 4222223 - 4222177
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcccagat 61  Q
    |||||||||||||||||||||| |||| || ||||||||||||||||    
T  4222223 cagagagaatcgaacctaagactttgaggaggagcacactcccagat 4222177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 30311385 - 30311342
Alignment:
Q  18 agagaatcgaacctaagaccttgaagatgagcacactcccagat 61  Q
    |||||||||||||| ||||||||| || ||||||||||||||||    
T  30311385 agagaatcgaacctgagaccttgaggaggagcacactcccagat 30311342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 500
Target Start/End: Original strand, 3367309 - 3367355
Alignment:
Q  454 ttgtaatttataataactaaagaaatgtttgattcttctttctgatc 500  Q
    |||||||| |||||||| | |||||||||||||||| ||||||||||    
T  3367309 ttgtaattaataataacgatagaaatgtttgattctactttctgatc 3367355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 10445133 - 10445177
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcccag 59  Q
    ||||||||||||||||| |||||| || || ||||||||||||||    
T  10445133 cagagagaatcgaacctgagacctcgaggaggagcacactcccag 10445177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 31520601 - 31520645
Alignment:
Q  17 gagagaatcgaacctaagaccttgaagatgagcacactcccagat 61  Q
    ||||||||| |||||||||||| || || ||||||||||||||||    
T  31520601 gagagaatcaaacctaagacctcgaggaggagcacactcccagat 31520645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 37788460 - 37788500
Alignment:
Q  16 agagagaatcgaacctaagaccttgaagatgagcacactcc 56  Q
    |||||||||||||||| ||||||||| || |||||||||||    
T  37788460 agagagaatcgaacctgagaccttgaggaggagcacactcc 37788500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 53413027 - 53412983
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcccag 59  Q
    |||||||||| |||||| ||||||||| || ||||||||||||||    
T  53413027 cagagagaattgaacctgagaccttgaggaggagcacactcccag 53412983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 11306168 - 11306212
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcccag 59  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||    
T  11306168 cagagagaatcgaacctgagaccttgaagatgagcatactcccag 11306212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 30127477 - 30127437
Alignment:
Q  20 agaatcgaacctaagaccttgaagatgagcacactcccaga 60  Q
    |||||||||||| |||||| ||||| |||||||||||||||    
T  30127477 agaatcgaacctgagacctcgaagaggagcacactcccaga 30127437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 34984888 - 34984844
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcccag 59  Q
    ||||||||||||||||||||||||||| || ||||||||||||||    
T  34984888 cagagagaatcgaacctaagaccttgaggaggagcacactcccag 34984844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 43442278 - 43442232
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcccagat 61  Q
    ||||||||||||||||| ||||||||| || ||||||||||||||||    
T  43442278 cagagagaatcgaacctgagaccttgaggaggagcacactcccagat 43442232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 14285243 - 14285199
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcccag 59  Q
    ||||||||||||||||| ||||||||| || ||||||||||||||    
T  14285243 cagagagaatcgaacctgagaccttgaggaggagcacactcccag 14285199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 25627139 - 25627096
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactccca 58  Q
    ||||||||||||||||| ||||||||| || |||||||||||||    
T  25627139 cagagagaatcgaacctgagaccttgaggaggagcacactccca 25627096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 39327086 - 39327127
Alignment:
Q  17 gagagaatcgaacctaagaccttgaagatgagcacactccca 58  Q
    |||||||||||| |||||||||||| || |||||||||||||    
T  39327086 gagagaatcgaagctaagaccttgaggaggagcacactccca 39327127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 7918463 - 7918507
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcccag 59  Q
    ||||||||||||||||||||||||||| || |||  |||||||||    
T  7918463 cagagagaatcgaacctaagaccttgaggaggagtgcactcccag 7918507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 16773889 - 16773845
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcccag 59  Q
    ||||||||||||||||| |||||| || || ||||||||||||||    
T  16773889 cagagagaatcgaacctgagacctcgaggaggagcacactcccag 16773845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 18595995 - 18596039
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcccag 59  Q
    |||||| |||||||||||||||||||| || ||||||| ||||||    
T  18595995 cagagaaaatcgaacctaagaccttgaggaggagcacattcccag 18596039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 37274453 - 37274497
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcccag 59  Q
    ||||||||||||||||||||||||||| || ||||||||||||||    
T  37274453 cagagagaatcgaacctaagaccttgaggaggagcacactcccag 37274497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 19680782 - 19680825
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactccca 58  Q
    ||||||||||||||||||||||||||| || |||||||||||||    
T  19680782 cagagagaatcgaacctaagaccttgaggaagagcacactccca 19680825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 8325377 - 8325414
Alignment:
Q  19 gagaatcgaacctaagaccttgaagatgagcacactcc 56  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  8325377 gagaatcgaacctaagaccttgaggatgagcacactcc 8325414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 37109345 - 37109389
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcccag 59  Q
    ||||||||||||||||| ||||||||| || ||||||||||||||    
T  37109345 cagagagaatcgaacctgagaccttgaggaggagcacactcccag 37109389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 23378037 - 23377994
Alignment:
Q  16 agagagaatcgaacctaagaccttgaagatgagcacactcccag 59  Q
    |||||||||||||||| ||||||||| || ||||||||||||||    
T  23378037 agagagaatcgaacctgagaccttgaggaggagcacactcccag 23377994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 28635778 - 28635732
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcccagat 61  Q
    ||||||||||||||||||||||||  | || ||||||||||||||||    
T  28635778 cagagagaatcgaacctaagacctccaggaggagcacactcccagat 28635732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 38869850 - 38869804
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcccagat 61  Q
    ||||| ||||||||||| ||||||||| || ||||||||||||||||    
T  38869850 cagagggaatcgaacctgagaccttgaggaggagcacactcccagat 38869804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 7949448 - 7949489
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcc 56  Q
    ||||||||||||||||| ||||||||| || |||||||||||    
T  7949448 cagagagaatcgaacctgagaccttgaggaggagcacactcc 7949489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 49576890 - 49576931
Alignment:
Q  17 gagagaatcgaacctaagaccttgaagatgagcacactccca 58  Q
    ||||||||||||||| ||||||||| || |||||||||||||    
T  49576890 gagagaatcgaacctgagaccttgaggaggagcacactccca 49576931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 34661744 - 34661708
Alignment:
Q  18 agagaatcgaacctaagaccttgaagatgagcacact 54  Q
    |||||||||||||||| |||||||||| |||||||||    
T  34661744 agagaatcgaacctaaaaccttgaagaggagcacact 34661708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 33700767 - 33700814
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcccagatt 62  Q
    ||||||||||||||||| ||||||||| || |||||||||||||||||    
T  33700767 cagagagaatcgaacctgagaccttgaggaggagcacactcccagatt 33700814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 2799944 - 2799898
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcccagat 61  Q
    ||||||||||||||||| ||||||||| || ||||||||||||||||    
T  2799944 cagagagaatcgaacctgagaccttgaggaggagcacactcccagat 2799898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 27223128 - 27223170
Alignment:
Q  19 gagaatcgaacctaagaccttgaagatgagcacactcccagat 61  Q
    ||||||||||||| |||||||||||| ||||||||||||||||    
T  27223128 gagaatcgaacctgagaccttgaagaagagcacactcccagat 27223170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 40810549 - 40810503
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcccagat 61  Q
    ||||||||||||||||| |||||||||||| || |||||||||||||    
T  40810549 cagagagaatcgaacctgagaccttgaagaggaacacactcccagat 40810503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 36371552 - 36371508
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcccag 59  Q
    ||||||||||||||||| ||||||||| || ||||||||||||||    
T  36371552 cagagagaatcgaacctcagaccttgaggaggagcacactcccag 36371508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 3266006 - 3265963
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactccca 58  Q
    ||||||||||||||||| ||||||||| || |||||||||||||    
T  3266006 cagagagaatcgaacctgagaccttgaggaggagcacactccca 3265963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 15786317 - 15786360
Alignment:
Q  18 agagaatcgaacctaagaccttgaagatgagcacactcccagat 61  Q
    |||||||||||||| ||||||||| || ||||||||||||||||    
T  15786317 agagaatcgaacctgagaccttgaggaggagcacactcccagat 15786360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 8177176 - 8177222
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcccagat 61  Q
    ||||||||||||||||| | ||||||| || ||||||||||||||||    
T  8177176 cagagagaatcgaacctgaaaccttgaggaggagcacactcccagat 8177222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 1247195 - 1247151
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcccag 59  Q
    ||||||||||||||||| ||||||||| || ||| ||||||||||    
T  1247195 cagagagaatcgaacctgagaccttgaggaggagtacactcccag 1247151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 4566630 - 4566586
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcccag 59  Q
    ||||||||||||||||| ||||| ||| || ||||||||||||||    
T  4566630 cagagagaatcgaacctgagaccctgaggaggagcacactcccag 4566586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 51814574 - 51814530
Alignment:
Q  17 gagagaatcgaacctaagaccttgaagatgagcacactcccagat 61  Q
    ||||||||||||||| ||||||||| || |||||||||| |||||    
T  51814574 gagagaatcgaacctgagaccttgaggaggagcacactctcagat 51814530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 3624660 - 3624618
Alignment:
Q  17 gagagaatcgaacctaagaccttgaagatgagcacactcccag 59  Q
    ||||||||||||||| |||||||||||| ||||||||||||||    
T  3624660 gagagaatcgaacctgagaccttgaagaggagcacactcccag 3624618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 22193360 - 22193402
Alignment:
Q  17 gagagaatcgaacctaagaccttgaagatgagcacactcccag 59  Q
    ||||||||||||||||||||||||| || ||||||||||||||    
T  22193360 gagagaatcgaacctaagaccttgaggaggagcacactcccag 22193402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 3058046 - 3058086
Alignment:
Q  18 agagaatcgaacctaagaccttgaagatgagcacactccca 58  Q
    |||||||||||||| |||||||| ||| |||||||||||||    
T  3058046 agagaatcgaacctgagaccttgcagaggagcacactccca 3058086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 33017296 - 33017252
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcccag 59  Q
    ||||||||||||||||| ||||||||| || ||||||||| ||||    
T  33017296 cagagagaatcgaacctgagaccttgaggaggagcacacttccag 33017252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 16918572 - 16918618
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcccagat 61  Q
    ||||||||||| ||||||||||||||| || ||||||||||||||||    
T  16918572 cagagagaatccaacctaagaccttgaggaggagcacactcccagat 16918618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 6859307 - 6859349
Alignment:
Q  16 agagagaatcgaacctaagaccttgaagatgagcacactccca 58  Q
    |||||||||||||||| |||| ||||||| |||||||||||||    
T  6859307 agagagaatcgaacctgagactttgaagaggagcacactccca 6859349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 28194256 - 28194301
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcccagat 61  Q
    ||||||||||||||||||||||||| |||| ||||||||||| ||||    
T  28194256 cagagagaatcgaacctaagacctt-aagaggagcacactccaagat 28194301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 42327392 - 42327433
Alignment:
Q  18 agagaatcgaacctaagaccttgaagatgagcacactcccag 59  Q
    |||||||||||||| ||||||||| || ||||||||||||||    
T  42327392 agagaatcgaacctgagaccttgaggaggagcacactcccag 42327433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 29503349 - 29503309
Alignment:
Q  19 gagaatcgaacctaagaccttgaagatgagcacactcccag 59  Q
    ||||||||||||| ||||||||| || ||||||||||||||    
T  29503349 gagaatcgaacctgagaccttgaggaggagcacactcccag 29503309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 13042 - 13086
Alignment:
Q  17 gagagaatcgaacctaagaccttgaagatgagcacactcccagat 61  Q
    ||||||||||||||| ||||||||| || ||||||||||||||||    
T  13042 gagagaatcgaacctgagaccttgaggaggagcacactcccagat 13086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 26459404 - 26459448
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcccag 59  Q
    ||||||||||||||||| ||||||||| || ||||||||||||||    
T  26459404 cagagagaatcgaacctgagaccttgaggaggagcacactcccag 26459448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 14058333 - 14058295
Alignment:
Q  17 gagagaatcgaacctaagaccttgaagatgagcacactc 55  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  14058333 gagagaatcgaacctgagaccttgaggatgagcacactc 14058295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 14368361 - 14368323
Alignment:
Q  17 gagagaatcgaacctaagaccttgaagatgagcacactc 55  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  14368361 gagagaatcgaacctgagaccttgaggatgagcacactc 14368323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 17041008 - 17041052
Alignment:
Q  17 gagagaatcgaacctaagaccttgaagatgagcacactcccagat 61  Q
    ||||||||||||||| ||||||||| || ||||||||| ||||||    
T  17041008 gagagaatcgaacctgagaccttgaggaggagcacacttccagat 17041052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 19553531 - 19553491
Alignment:
Q  19 gagaatcgaacctaagaccttgaagatgagcacactcccag 59  Q
    |||||| |||||||||||||||| || ||||||||||||||    
T  19553531 gagaattgaacctaagaccttgaggaggagcacactcccag 19553491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 22760941 - 22760901
Alignment:
Q  19 gagaatcgaacctaagaccttgaagatgagcacactcccag 59  Q
    ||||||||||||| ||||||||| || ||||||||||||||    
T  22760941 gagaatcgaacctgagaccttgaggaggagcacactcccag 22760901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 33222452 - 33222408
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcccag 59  Q
    ||||||||||||||||| ||||||||| |||||| ||||| ||||    
T  33222452 cagagagaatcgaacctgagaccttgaggatgagtacacttccag 33222408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 38374597 - 38374633
Alignment:
Q  19 gagaatcgaacctaagaccttgaagatgagcacactc 55  Q
    ||||||||||||||||||||||| || ||||||||||    
T  38374597 gagaatcgaacctaagaccttgaggaggagcacactc 38374633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 43215265 - 43215225
Alignment:
Q  16 agagagaatcgaacctaagaccttgaagatgagcacactcc 56  Q
    |||||||||||||||| ||||||||| || |||||||||||    
T  43215265 agagagaatcgaacctgagaccttgaggaggagcacactcc 43215225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 11610 - 11564
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcccagat 61  Q
    ||||||||||||||||| |||||| || || ||||||||||||||||    
T  11610 cagagagaatcgaacctgagacctcgaggaggagcacactcccagat 11564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 2468 - 2510
Alignment:
Q  19 gagaatcgaacctaagaccttgaagatgagcacactcccagat 61  Q
    ||||||||||||| ||||||||| || ||||||||||||||||    
T  2468 gagaatcgaacctgagaccttgaggaggagcacactcccagat 2510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 19956 - 20000
Alignment:
Q  15 cagagagaatcgaacctaagaccttgaagatgagcacactcccag 59  Q
    ||||||||||||||||| ||||||||| || ||||| ||||||||    
T  19956 cagagagaatcgaacctgagaccttgaggaggagcatactcccag 20000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University