View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9980_low_40 (Length: 240)
Name: NF9980_low_40
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9980_low_40 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 189499 - 189280
Alignment:
| Q |
4 |
tttgttgaactcgggcttgaattcttgcaatgttccttaggtgcaatgattttgtaatccttaagatgttgcagcaattctttccatgtcacttttccaa |
103 |
Q |
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| T |
189499 |
tttgttgaactcgggcttgaattcttgcaatgttccttaggtgcaatcattttgtaatccttaagatgttgcagcaattctttccatgccacttttccaa |
189400 |
T |
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| Q |
104 |
cgttttaatattgatcagcgcatatggaaggcgactactgatggcttttcctcagttaaatcagcctaccgcatacactccaaacttatcaatgcagcca |
203 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
189399 |
cgtgttaatattgatcagcgcatatggaaggcgactactgatggcttttcctctgttaaatcagcctaccgcatatactccaaacttatcaatgcagcca |
189300 |
T |
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| Q |
204 |
ctcccattggaggtgatact |
223 |
Q |
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||||||| |||||||||||| |
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| T |
189299 |
ctcccatcggaggtgatact |
189280 |
T |
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