View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9980_low_43 (Length: 238)
Name: NF9980_low_43
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9980_low_43 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 40454812 - 40455019
Alignment:
| Q |
1 |
atctcaattattatctctctttctatactataataataataatatggtgttgattatatcgtgcgggcatagttgttgatagtacacggtttttagtata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
40454812 |
atctcaattattatctctctttctatactataataataata---tggtgttgattatatcgtgcgggcatagttgttgatagt--------------ata |
40454894 |
T |
|
| Q |
101 |
aaaaataactatagaatatgatacaaataaaatatcacccgtttgttcagaagtgattattggtttaactttttggaggc--atatatgccttggtgctt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
40454895 |
aaaaataactatagaatatgatacaaataaaatatcacccgtttgttcagaagtgattattggtttaactttttggaggcatatatatgccttggtgctt |
40454994 |
T |
|
| Q |
199 |
gctttataaccgtccatcttctttt |
223 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
40454995 |
gctttataaccgtccatcttctttt |
40455019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University