View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9980_low_5 (Length: 535)

Name: NF9980_low_5
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9980_low_5
NF9980_low_5
[»] chr6 (3 HSPs)
chr6 (21-522)||(6368408-6368905)
chr6 (68-127)||(5642546-5642605)
chr6 (87-126)||(32312815-32312854)
[»] chr8 (3 HSPs)
chr8 (108-186)||(41146216-41146294)
chr8 (112-193)||(29471776-29471857)
chr8 (75-126)||(41146130-41146181)
[»] chr3 (1 HSPs)
chr3 (109-181)||(48847597-48847669)
[»] chr5 (1 HSPs)
chr5 (111-166)||(12429818-12429873)
[»] chr1 (2 HSPs)
chr1 (87-126)||(9607674-9607713)
chr1 (93-126)||(30192232-30192265)
[»] scaffold0065 (1 HSPs)
scaffold0065 (87-126)||(49577-49616)
[»] chr4 (3 HSPs)
chr4 (108-186)||(41921941-41922019)
chr4 (84-126)||(41922054-41922096)
chr4 (90-126)||(49378892-49378928)
[»] chr2 (1 HSPs)
chr2 (88-118)||(36639113-36639143)
[»] chr7 (1 HSPs)
chr7 (112-181)||(10201437-10201506)


Alignment Details
Target: chr6 (Bit Score: 418; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 21 - 522
Target Start/End: Complemental strand, 6368905 - 6368408
Alignment:
Q  21 tattgttgaaaaaatataaaatctcacagaaaacaaagacaagtaactaagtgcatgttaggtattgcgtttgcaaaacggagtttgatgaaaatcacgg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6368905 tattgttgaaaaaatataaaatctcacagaaaacaaagacaagtaactaagtgcatgttaggtattgcgtttgcaaaacggagtttgatgaaaatcacgg 6368806  T
Q  121 caaaaatgcatcgggaagcgtgcaagtgtgcttttctgtgttgcaaacgtgaaaccaaacatacaccaagtaagcatatggaagaattaagttcaattgg 220  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||    
T  6368805 caaaaatgcatcgggaagcgtgcaaacgtgcttttctgtgttgcaaacgtgaaaccaaac--acactaagtaagcatatggaagaattaagttcaattgg 6368708  T
Q  221 tttgaattcttgaatatgtcaagcagtgtcacgatagtttctacaaatacatcaaatttataaaacatctctaaatgtgtctttcgttcgtcaattttgt 320  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6368707 tttgaattcttgaatatgtcaagcagtgtcacgatagtctctacaaatacaccaaatttataaaacatcactaaatgtgtctttcgttcgtcaattttgt 6368608  T
Q  321 cgtcaaacatgtgttccgtttctctatttggtgcttattaaaattactagcagaagacacatccatagatattttcaaagtttcgatacatttagagact 420  Q
    |||||||||||||||| ||||||   ||||||||   |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6368607 cgtcaaacatgtgttcagtttcttcgtttggtgc---ttaaaattactagcagaagacacatccatagatattttcaaagtttagatacatttagagact 6368511  T
Q  421 ataatag-accacgtcacacatttacggaccaaaatgacaatttactcatatactaatacgaagcaacacgatgcaaaatatttaatacatacataccct 519  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6368510 ataatagcaccacctcacacatttacggaccaaaatgacaatttactcatatactaatacgaagcaacactatgcaaaatatttaatacatacataccct 6368411  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 5642546 - 5642605
Alignment:
Q  68 taagtgcatgttaggtattgcgtttgcaaaacggagtttgatgaaaatcacggcaaaaat 127  Q
    |||| ||||||| ||||||| ||||| |||||||||||| |||||||||||| |||||||    
T  5642546 taagagcatgtttggtattgggtttgtaaaacggagtttaatgaaaatcacgacaaaaat 5642605  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 126
Target Start/End: Original strand, 32312815 - 32312854
Alignment:
Q  87 gcgtttgcaaaacggagtttgatgaaaatcacggcaaaaa 126  Q
    |||||||||||||||| ||||||| |||||||||||||||    
T  32312815 gcgtttgcaaaacggactttgatggaaatcacggcaaaaa 32312854  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 41146216 - 41146294
Alignment:
Q  108 atgaaaatcacggcaaaaatgcatcgggaagcgtgcaagtgtgcttttctgtgttgcaaacgtgaaaccaaacatacac 186  Q
    |||| |||||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||| ||||||||||||||||    
T  41146216 atgagaatcacggcaaaaatgtatcggaaagcgtgcaagtatgcttttgtgtgttgcaaacgggaaaccaaacatacac 41146294  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 193
Target Start/End: Original strand, 29471776 - 29471857
Alignment:
Q  112 aaatcacggcaaaaatgcatcgggaagcgtgcaagtgtgcttttctgtgttgcaaacgtgaaaccaaacatacaccaagtaa 193  Q
    |||||||  ||||||||||||||||||| ||||| ||||||||| | |||||||||||  |||||||||| || ||||||||    
T  29471776 aaatcacaacaaaaatgcatcgggaagcatgcaaatgtgcttttatatgttgcaaacggaaaaccaaacacacgccaagtaa 29471857  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 41146130 - 41146181
Alignment:
Q  75 atgttaggtattgcgtttgcaaaacggagtttgatgaaaatcacggcaaaaa 126  Q
    ||||| || |||| |||||||||||||||||||||  |||||||||||||||    
T  41146130 atgtttggcattgtgtttgcaaaacggagtttgatagaaatcacggcaaaaa 41146181  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 48847669 - 48847597
Alignment:
Q  109 tgaaaatcacggcaaaaatgcatcgggaagcgtgcaagtgtgcttttctgtgttgcaaacgtgaaaccaaaca 181  Q
    |||||||||||||||||||||||||| || |||||||   ||||||| | |||||||||||  ||||||||||    
T  48847669 tgaaaatcacggcaaaaatgcatcggaaaacgtgcaaacatgcttttgtatgttgcaaacggaaaaccaaaca 48847597  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 12429818 - 12429873
Alignment:
Q  111 aaaatcacggcaaaaatgcatcgggaagcgtgcaagtgtgcttttctgtgttgcaa 166  Q
    ||||||||||||||||||||| || ||||||||||  |||||||| ||||||||||    
T  12429818 aaaatcacggcaaaaatgcattggaaagcgtgcaaacgtgcttttatgtgttgcaa 12429873  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 87 - 126
Target Start/End: Complemental strand, 9607713 - 9607674
Alignment:
Q  87 gcgtttgcaaaacggagtttgatgaaaatcacggcaaaaa 126  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  9607713 gcgtttgcaaaacggtgtttgatgaaaatcacggcaaaaa 9607674  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 126
Target Start/End: Original strand, 30192232 - 30192265
Alignment:
Q  93 gcaaaacggagtttgatgaaaatcacggcaaaaa 126  Q
    |||||| |||||||||||||||||||||||||||    
T  30192232 gcaaaatggagtttgatgaaaatcacggcaaaaa 30192265  T

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Target: scaffold0065 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 126
Target Start/End: Complemental strand, 49616 - 49577
Alignment:
Q  87 gcgtttgcaaaacggagtttgatgaaaatcacggcaaaaa 126  Q
    |||||||||||||||||||| |||||||||||| ||||||    
T  49616 gcgtttgcaaaacggagtttaatgaaaatcacgacaaaaa 49577  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 186
Target Start/End: Complemental strand, 41922019 - 41921941
Alignment:
Q  108 atgaaaatcacggcaaaaatgcatcgggaagcgtgcaagtgtgcttttctgtgttgcaaacgtgaaaccaaacatacac 186  Q
    |||| ||||||||||||||||||| || ||| ||||||  ||| |||| |||||||||||   |||| |||||||||||    
T  41922019 atgagaatcacggcaaaaatgcattggaaagtgtgcaaacgtgtttttgtgtgttgcaaagaggaaatcaaacatacac 41921941  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 126
Target Start/End: Complemental strand, 41922096 - 41922054
Alignment:
Q  84 attgcgtttgcaaaacggagtttgatgaaaatcacggcaaaaa 126  Q
    |||||||||| |||||||||||||||  |||||||||||||||    
T  41922096 attgcgtttgaaaaacggagtttgatagaaatcacggcaaaaa 41922054  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 49378928 - 49378892
Alignment:
Q  90 tttgcaaaacggagtttgatgaaaatcacggcaaaaa 126  Q
    |||||||||||||||||||| |||||||||| |||||    
T  49378928 tttgcaaaacggagtttgataaaaatcacggtaaaaa 49378892  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 118
Target Start/End: Complemental strand, 36639143 - 36639113
Alignment:
Q  88 cgtttgcaaaacggagtttgatgaaaatcac 118  Q
    |||||||||||||||||||||||||||||||    
T  36639143 cgtttgcaaaacggagtttgatgaaaatcac 36639113  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 181
Target Start/End: Original strand, 10201437 - 10201506
Alignment:
Q  112 aaatcacggcaaaaatgcatcgggaagcgtgcaagtgtgcttttctgtgttgcaaacgtgaaaccaaaca 181  Q
    ||||||| |||||||| |||| | ||||||||||  ||| |||| |||||||||||||  ||||||||||    
T  10201437 aaatcacagcaaaaatacatcagaaagcgtgcaaacgtgattttgtgtgttgcaaacggaaaaccaaaca 10201506  T

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