View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9980_low_50 (Length: 219)
Name: NF9980_low_50
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9980_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 48790324 - 48790141
Alignment:
| Q |
16 |
agggtacatttctgagttgtttgtgccataccaagatccaacagaagaattttactttaagacatttttcgattctggtgagtttggatttggtctatcg |
115 |
Q |
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| T |
48790324 |
agggtacatttctgagttgtttgtgccataccaagatccaacagaagaattttactttaagacatttttcgattctggtgagtttggatttggtctatcg |
48790225 |
T |
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| Q |
116 |
actgtgtctttgatacccaaccgtgattgtccaccacatgctcaattcattgatacatacattcactctgatgatggtacccca |
199 |
Q |
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| T |
48790224 |
actgtgtctttgatacccaaccgtgattgtccaccacatgcccaattcattgatacatacattcactctgatgatggtacccca |
48790141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 15825855 - 15825676
Alignment:
| Q |
16 |
agggtacatttctgagttgtttgtgccataccaagatccaacagaagaattttactttaagacatttttcgattctggtgagtttggatttggtctatcg |
115 |
Q |
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| T |
15825855 |
agggtatatttctgagttgtttgtgccataccaagatccaacagaagagttttactttaagacatttttcgatgctggagagtatggatttggtcgatct |
15825756 |
T |
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| Q |
116 |
actgtgtctttgatacccaaccgtgattgtccaccacatgctcaattcattgatacatacattcactctgatgatggtac |
195 |
Q |
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| T |
15825755 |
actgtttctttgatacctaatcgtgactgtccaccacactctcatttcattgatacatacattcactctgtagatggtac |
15825676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 48816621 - 48816446
Alignment:
| Q |
20 |
tacatttctgagttgtttgtgccataccaagatccaacagaagaattttactttaagacatttttcgattctggtgagtttggatttggtctatcgactg |
119 |
Q |
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| T |
48816621 |
tacatttccgagctatttgtgccttatcaagacccaaccgaagagttttactttaagactttctttgattctggagagtttggatttggtctgtcaacgg |
48816522 |
T |
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| Q |
120 |
tgtctttgatacccaaccgtgattgtccaccacatgctcaattcattgatacatacattcactctgatgatggtac |
195 |
Q |
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| T |
48816521 |
tgtctttgatacctaatcgtgattgtccaccacatgctcagttcattgatacatacattcactcggctgatggtac |
48816446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 48808062 - 48807905
Alignment:
| Q |
20 |
tacatttctgagttgtttgtgccataccaagatccaacagaagaattttactttaagacatttttcgattctggtgagtttggatttggtctatcgactg |
119 |
Q |
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| T |
48808062 |
tacatttccgagctatttgtgccttatcaagacccaaccgaagaattttactttaagactttctttgattctggagagtttggatttgccctgtcaacgg |
48807963 |
T |
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| Q |
120 |
tgtctttgatacccaaccgtgattgtccaccacatgctcaattcattgatacatacat |
177 |
Q |
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| T |
48807962 |
tgtctttgatacctaatcgtgattgtccaccacatgctcagttcattcatacatacat |
48807905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 48833877 - 48834040
Alignment:
| Q |
20 |
tacatttctgagttgtttgtgccataccaagatccaacagaagaattttactttaagacatttttcgattctggtgagtttggatttggtctatcgactg |
119 |
Q |
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| T |
48833877 |
tacatttctgaactttttgtgccataccaagatccatctgatgaattttactttaagactttctttgatgctggagagtttgaatttggtttgtcaacgg |
48833976 |
T |
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| Q |
120 |
tgtctttgatacccaaccgtgattgtccaccacatgctcaattcattgatacatacattcactc |
183 |
Q |
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| T |
48833977 |
tgtctttgatacctaatcctgattgtccaccaaatgccgagttcattgatacatacactcactc |
48834040 |
T |
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