View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9980_low_6 (Length: 529)
Name: NF9980_low_6
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9980_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 23407816 - 23408093
Alignment:
| Q |
18 |
aggaaactcgttgaaaacgagcaacaccaccctgcctcgtggccagcatgggtttggggcagagaagaaccaattccaagaacaaatttactagtttgaa |
117 |
Q |
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| T |
23407816 |
aggaatctccttgaaaacgagcaacaccaccctgcctcgtggccagcatgggtttggggcagagaagaaccaataccaagaacaaatttactagtttgaa |
23407915 |
T |
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| Q |
118 |
caatgtgttcatatattagcattagctggatatagaatcaaacacacaccatgtatctttccttctaagctcacctctgaactttcatgtatatattttg |
217 |
Q |
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| T |
23407916 |
caatgtgttcatatattagcattagctggatatagaatcaaacacacaccatgtatctttctttctaagctcacctctgaactttcatgtatatattttg |
23408015 |
T |
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| Q |
218 |
tatcagatgtgtttgtgcttacagacaaaggatataagcttatcaaattctaattctcagtcaaattacaaaataata |
295 |
Q |
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| T |
23408016 |
tatcagatgtgtttgtgcttaaagacaaaggatataagcttatcaaattctaattctcagtcaaattacaaaataata |
23408093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 305 - 439
Target Start/End: Original strand, 23408192 - 23408326
Alignment:
| Q |
305 |
gtccacttataattaaacatatagcagatatcttctgcagaattacagcaaaaaacatccttaattttgcatctaagccaagatcaaattacagtgtcaa |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23408192 |
gtccacttataattaaacatatagcagatatcttctgcacaattacagcaaaaaacatccttaattttgcatctcagccaagatcaaattacagtgtcag |
23408291 |
T |
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| Q |
405 |
taaaattgattaattataaacaatcacaatccaca |
439 |
Q |
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| T |
23408292 |
taaaattgattaattataaacaatcacaacccaca |
23408326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 516
Target Start/End: Original strand, 23408328 - 23408370
Alignment:
| Q |
474 |
aggaggaatccaactatattttatgagaaaatgtattcagtct |
516 |
Q |
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| T |
23408328 |
aggaggaatccaactatattttatgagaaaatgtattccgtct |
23408370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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