View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9980_low_7 (Length: 481)
Name: NF9980_low_7
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9980_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 30898215 - 30898681
Alignment:
| Q |
1 |
tgtagagtgattttgcaacagtgagctctcgttctcaagtctcaaaatccacaggaggaactgtttcaagtggagaagaaagtagtaagagaaggaaagt |
100 |
Q |
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| T |
30898215 |
tgtagagtgattttgcaacagtgagctctcgttctcaagtctcaaaatccacaggaggaactgtttcaagtggagaagaaagtagtaagagaaggaaagt |
30898314 |
T |
|
| Q |
101 |
atcttcagcaaagcaagcggctcaaacctcgtcatctggtgatgatattctaacagcaatgccatgtcttgtcacactgaatccaggggtaaagataaca |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30898315 |
atcttcggcaaagcaagcggctcaaacctcgtcatctggtgatgatattctaacagcaatgccatgtcttgtcacactgaatccaggggtaaagataaca |
30898414 |
T |
|
| Q |
201 |
agtgttgctgccggtgggcgtcataccctagtattgtcaggtattgactttatatggactatttattctcccgagcttaaaatttcatgtaatgtgacca |
300 |
Q |
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| T |
30898415 |
agtgttgctgctggtgggcgtcataccctagtattgtcaggtattgaatttatatggactatttattctcccgagcttaaaatttcatgtaatgtgacca |
30898514 |
T |
|
| Q |
301 |
tcttttgattgaagcatcacttttgtgctatggaagatcagacatgcagtcttagacatgtcattaattgtagctttctgaatttttcagatataggaca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30898515 |
tcttttgattgaagcatcacttttgtgctatggaagatcagacatgcagtcttagacatgtcattaattgtagctttctgaatttttcagatataggaca |
30898614 |
T |
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| Q |
401 |
ggtgtggggttggggctatggaggtgaagggcagcttggtttgggctccagagtacgtatgatgtcc |
467 |
Q |
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| T |
30898615 |
ggtgtggggttggggctatggaggtgaagggcagcttggtttgggctccagagtacgtatggtgtcc |
30898681 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 445
Target Start/End: Original strand, 23117638 - 23117699
Alignment:
| Q |
384 |
ttttcagatataggacaggtgtggggttggggctatggaggtgaagggcagcttggtttggg |
445 |
Q |
| |
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||||||||| | |||||||| |||||||||||||||||||| ||||| ||||| |||||||| |
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| T |
23117638 |
ttttcagatgtgggacaggtctggggttggggctatggaggcgaaggacagctaggtttggg |
23117699 |
T |
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