View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9980_low_8 (Length: 481)
Name: NF9980_low_8
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9980_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 133; Significance: 6e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 24861155 - 24860928
Alignment:
| Q |
1 |
acctatgaagaagcttaaccctttctttcaaatgctttttaggaaccaaatatttatccattttcgcgcgttctctgcaaataatcgcttcaacccctca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||| |
|
|
| T |
24861155 |
acctatgaagaagcttaaccctttctttcaaatgctttttaggaaccaaatatttatccattttcgcgctttctctgaaaataatcgcttaaacccctca |
24861056 |
T |
|
| Q |
101 |
aaaccaaaaattattttcaaccaaacaa--nnnnnnnnnnnntcaacagcgtccnnnnnnnttcccgccaattaaatgggccccaataaag--ttgtggg |
196 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24861055 |
aaaccaaaaataattttcaaccaaacaactctctctctctcttcaacagcgtccaaaaaaattcccgccaattaaatgggccccaataaagttttgtggg |
24860956 |
T |
|
| Q |
197 |
ccacacttaagcccagcccaatatcacc |
224 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
24860955 |
ccacacttaagcccagcccaatatcacc |
24860928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 316 - 463
Target Start/End: Complemental strand, 24860836 - 24860688
Alignment:
| Q |
316 |
gaaaccagtaatttcatttcatttcattccgataataataaacattacatcaccgata--cgattacattagaaaacgaaacgctaaatcttcaaaattt |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24860836 |
gaaaccagtaatttcatttcatttcattccgataataataa-cattacatcaccgatatacgattacattagaaaacgaaacgctaaatcttcgaaattt |
24860738 |
T |
|
| Q |
414 |
caagtaaattacattaataaccctaagcctgtgcttaagccctctcgcct |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24860737 |
caagtaaattacattaataaccctaagcctatgcttaagccctctcgcct |
24860688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University