View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9980_low_9 (Length: 479)

Name: NF9980_low_9
Description: NF9980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9980_low_9
NF9980_low_9
[»] chr1 (1 HSPs)
chr1 (1-461)||(44247243-44247706)
[»] chr2 (3 HSPs)
chr2 (390-427)||(41508543-41508580)
chr2 (383-431)||(8518035-8518084)
chr2 (395-428)||(33498634-33498667)
[»] chr7 (1 HSPs)
chr7 (395-431)||(9483387-9483423)
[»] chr6 (2 HSPs)
chr6 (401-431)||(10620641-10620671)
chr6 (395-425)||(32694778-32694808)
[»] chr4 (2 HSPs)
chr4 (397-431)||(44412355-44412389)
chr4 (395-423)||(24875735-24875763)
[»] chr3 (3 HSPs)
chr3 (390-428)||(51497996-51498034)
chr3 (186-223)||(2460229-2460266)
chr3 (395-427)||(26643298-26643330)


Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 44247243 - 44247706
Alignment:
Q  1 gaaagcataaagtagttgatggcaat---ggtggtgcaagaggaaaaagagatggtgagttgaaagatagtaagaagcagttgaataggtgttttgatga 97  Q
    ||||||||||||||||||||||||||   ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44247243 gaaagcataaagtagttgatggcaatattggtggtgcaagaggaaagagagatggtgagttgaaagatagtaagaagcagttgaataggtgttttgatga 44247342  T
Q  98 tgagatggtggatggttggcctaaatggttggttgataatgttccttctcaagtgttggctggtgttgttgccaagagtgccgaatcttacaaaatgatt 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44247343 tgagatggtggatggttggcctaaatggttggttgataatgttccttctcaagtgttggctggtgttgttgccaagagtgccgaatcttacaaaatgatt 44247442  T
Q  198 gataaggttagatgctctttcttcatgtaacagttctgtttgatgatttttaaacgtagtatagtatatatggattaagcaatgatttatgtcaagggtt 297  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44247443 gataaggttagatgctctttcttcatgtaacagttctgtttcatgatttttaaacgtagtatagtatatatggattaagcaatgatttatgtcaagggtt 44247542  T
Q  298 ttggaaaattccaagcacaaaatgatttggtaattcaatggctatcggctttagtgtgctatgtagcgtgttcactgttcagtgtacacatttagtaaca 397  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44247543 ttggaaaattccaagtacaaaatgatttggtaattcaatggctatcggctttagtgtgctatgtagcgtgttcactgttcggtgtacacatttagtaaca 44247642  T
Q  398 ttcaattattctattttctcaaattattactggtctatgtgttattgtgtctggtgtcaatact 461  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||    
T  44247643 ttcaattattctattttctcaaattattactggtctatccgttattgtgtctggtctcaatact 44247706  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 390 - 427
Target Start/End: Complemental strand, 41508580 - 41508543
Alignment:
Q  390 tagtaacattcaattattctattttctcaaattattac 427  Q
    |||| |||||||||||||||||||||||||||||||||    
T  41508580 tagttacattcaattattctattttctcaaattattac 41508543  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 431
Target Start/End: Complemental strand, 8518084 - 8518035
Alignment:
Q  383 acacatttagtaacattcaatta-ttctattttctcaaattattactggt 431  Q
    ||||||||||| ||||||||||| ||||||||||||||||| ||| ||||    
T  8518084 acacatttagttacattcaattacttctattttctcaaattgttattggt 8518035  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 428
Target Start/End: Complemental strand, 33498667 - 33498634
Alignment:
Q  395 acattcaattattctattttctcaaattattact 428  Q
    |||||||||||||| |||||||||||||||||||    
T  33498667 acattcaattattccattttctcaaattattact 33498634  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 9483423 - 9483387
Alignment:
Q  395 acattcaattattctattttctcaaattattactggt 431  Q
    |||||||||||||||||||||||||||||||| ||||    
T  9483423 acattcaattattctattttctcaaattattattggt 9483387  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 431
Target Start/End: Complemental strand, 10620671 - 10620641
Alignment:
Q  401 aattattctattttctcaaattattactggt 431  Q
    |||||||||||||||||||||||||||||||    
T  10620671 aattattctattttctcaaattattactggt 10620641  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 425
Target Start/End: Original strand, 32694778 - 32694808
Alignment:
Q  395 acattcaattattctattttctcaaattatt 425  Q
    |||||||||||||||||||||||||||||||    
T  32694778 acattcaattattctattttctcaaattatt 32694808  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Complemental strand, 44412389 - 44412355
Alignment:
Q  397 attcaattattctattttctcaaattattactggt 431  Q
    ||||||| |||||||||||||||||||||||||||    
T  44412389 attcaatcattctattttctcaaattattactggt 44412355  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 423
Target Start/End: Complemental strand, 24875763 - 24875735
Alignment:
Q  395 acattcaattattctattttctcaaatta 423  Q
    |||||||||||||||||||||||||||||    
T  24875763 acattcaattattctattttctcaaatta 24875735  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 428
Target Start/End: Complemental strand, 51498034 - 51497996
Alignment:
Q  390 tagtaacattcaattattctattttctcaaattattact 428  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  51498034 tagttacattcaattattctattttatcaaattattact 51497996  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 2460229 - 2460266
Alignment:
Q  186 tacaaaatgattgataaggttagatgctctttcttcat 223  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  2460229 tacaaaatgatttataaggttaggtgctctttcttcat 2460266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 427
Target Start/End: Original strand, 26643298 - 26643330
Alignment:
Q  395 acattcaattattctattttctcaaattattac 427  Q
    |||||||||||||||||||||| ||||||||||    
T  26643298 acattcaattattctattttcttaaattattac 26643330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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