View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9981_low_1 (Length: 470)
Name: NF9981_low_1
Description: NF9981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9981_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 49866162 - 49865709
Alignment:
| Q |
1 |
tgatcaaagcagtattcaaagcaacagctgaagaactctcgaaacaaatccatagctcaaaactctacaaggaattagctaccaatgacatgacaaagca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49866162 |
tgatcaaagcagtattcaaagcaacagctgaagaactctcgaaacaaatccataactcaaaactctacaaggaattagctaccaatgacatgacaaagca |
49866063 |
T |
|
| Q |
101 |
agctatggatatttgcaaagaagtccttggttatgcagttgatgatattcatcaatctattcacacattggataaatttgatattagaaaaattgatgag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
49866062 |
agctatggatatttgcaaagaagtccttggttatgcagttgatgatgttcatcaatctattcactcattggataaatttgatattagaaaaattgatgag |
49865963 |
T |
|
| Q |
201 |
attgcttatgatcttaaagtttggctctcaggtacacttgccaatcaacaaacatgtttatatggatttgagaacacaactacccatgcagaacaaacca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49865962 |
attgcttatgatcttaaagtttggctctcaggtacacttgccaatcaacaaacatgtttatatggatttgagaacacaactacccatgcagaacaaacca |
49865863 |
T |
|
| Q |
301 |
tggctaaggttcttaaggcttctttggagctaactaacaatgctttggatataatcaatggactttcaggatttgtgaaagatcttaacttgagctcttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
49865862 |
tggctaaggttcttaaggcttctttggagctaactaacaatgctttggatataatcaatggactttcaggatttgtaaaagatcttaacttgagctcttt |
49865763 |
T |
|
| Q |
401 |
aacaagtgttttgaaaaataataggaagcatttgtctgaagatggtttgccatc |
454 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49865762 |
aacaagtgttttgaataataataggaagcatttgtctgaagatggtttgccatc |
49865709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 49872093 - 49871640
Alignment:
| Q |
1 |
tgatcaaagcagtattcaaagcaacagctgaagaactctcgaaacaaatccatagctcaaaactctacaaggaattagctaccaatgacatgacaaagca |
100 |
Q |
| |
|
|||||||| || |||||| |||||||||||||||||| ||||||||| || | ||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
49872093 |
tgatcaaacaagcattcaatgcaacagctgaagaactcgtgaaacaaatacacaactcaacactctacaaggaattggctaccaatgacatgacaaagca |
49871994 |
T |
|
| Q |
101 |
agctatggatatttgcaaagaagtccttggttatgcagttgatgatattcatcaatctattcacacattggataaatttgatattagaaaaattgatgag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| |||||||||||| |
|
|
| T |
49871993 |
agctatggatatttgcaaagaagtccttggttatgcagttgatgatgttcatcaatctattcactcattggataaatttgatcttaacaaaattgatgag |
49871894 |
T |
|
| Q |
201 |
attgcttatgatcttaaagtttggctctcaggtacacttgccaatcaacaaacatgtttatatggatttgagaacacaactacccatgcagaacaaacca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49871893 |
attgcttatgatcttaaagtttggctctcaggtacacttgccaatcaacaaacatgtttagatggatttgagaacacaactacccatgcaggacaaacca |
49871794 |
T |
|
| Q |
301 |
tggctaaggttcttaaggcttctttggagctaactaacaatgctttggatataatcaatggactttcaggatttgtgaaagatcttaacttgagctcttt |
400 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49871793 |
tggctaaggttcttaacgcttctttggagctaagtaacaatgctttggatataatcaatggtctttcaggatttgtgaaagatcttaacttgagctcttt |
49871694 |
T |
|
| Q |
401 |
aacaagtgttttgaaaaataataggaagcatttgtctgaagatggtttgccatc |
454 |
Q |
| |
|
|||||| |||||| ||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
49871693 |
tgcaagtgctttgaataataataggaagcttttgtctgaagatggtttaccatc |
49871640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University