View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9981_low_2 (Length: 448)
Name: NF9981_low_2
Description: NF9981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9981_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 16 - 440
Target Start/End: Complemental strand, 517781 - 517357
Alignment:
| Q |
16 |
cacaacaacgtgtactcctatgttttggtttggttatattacaaactatttgccaactaacaatagaataagttgtagcatcaagtcctctagggtctgg |
115 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
517781 |
cacagcaacgtgtactcctatgttttggtttggttatattacaaactatttgccaactaacaatagaataagttgtagcatcaagtcctctagggtctgg |
517682 |
T |
|
| Q |
116 |
aaattttgtcggttcaactttcaatggtggtccacaagtataagctgagttaagaactcccattattttccatcttgctggtgggaaaatagatttttta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
517681 |
aaattttgtcggttcaactttcaatggtggtccacaagtataagctgagttaagaactcccattattttccatcttgctggtgggaaaatagatttttta |
517582 |
T |
|
| Q |
216 |
tccaaatcaggtggacatttaaaaacttgcatttgaaaaattgacttggattggcttggatccataagtattggtaaaagagttccatttctacaacaaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
517581 |
tccaaatcaggtggacatttaaaaacttgcatttgaaaaattgacttggattggcttggatccataagtattggtaaaagagttccatttctacaacaaa |
517482 |
T |
|
| Q |
316 |
atggtattttaccaatttcagtgtcattatatttttctggaggcaaatcacttattacaggannnnnnngacaattaattactttggagaaatccatgtc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
517481 |
atggtattttaccaatttcagtgtcattatatttttctggaggcaaatcacttattacaggatttttttgacaattaattactttggagaaatccatgtc |
517382 |
T |
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| Q |
416 |
cttgtagtattgtccagcaacacca |
440 |
Q |
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||||||||||||||||||||||||| |
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| T |
517381 |
cttgtagtattgtccagcaacacca |
517357 |
T |
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