View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9981_low_21 (Length: 257)
Name: NF9981_low_21
Description: NF9981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9981_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 42980012 - 42979770
Alignment:
| Q |
1 |
ttttaaggtagtttttctgttcatttctttatcttctttgaatttcttgcttaattaaaaaatagatttaattctggttatgtcaatgtatatttaagga |
100 |
Q |
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| T |
42980012 |
ttttaaggtagtttttctgttcatttctttatcttctttgaatttcttgcttaattaaaaaatagatttaattctggttatgtcaatgtatatttaagga |
42979913 |
T |
|
| Q |
101 |
tggttcggtgtggaggaccaataaatttacggatttttgtcaacattcaattcctgtcggttgctctgctgatacgccgatctgggaacggagattgctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42979912 |
tggttcggtgtggaggaccaataaatttacggatttttgtcaacattcaattcctgtcggttgctctgctgatacgccgatctgggaacggagattgctt |
42979813 |
T |
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| Q |
201 |
tactgtgttccggtgagctttgcatttctcgctgctctgatgt |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42979812 |
tactgtgttccggtgagctttgcatttctcgctgctctaatgt |
42979770 |
T |
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