View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9981_low_22 (Length: 247)
Name: NF9981_low_22
Description: NF9981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9981_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 45102097 - 45101868
Alignment:
| Q |
1 |
gtagtattcaaaatggagtagatgttaagcaaacatgttgaactataatctcttatatataatgtcatgaatcagagtacgaatctctattgagagagat |
100 |
Q |
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| T |
45102097 |
gtagtattcaaaatggagtagatgttaaacaaacatgttgaactataatctcttatatacaatgtcatgaatcagagtacgaatctctattgagagagat |
45101998 |
T |
|
| Q |
101 |
gtctatatatcatatttgatagtgtctcgaataaaattatctctaataaaaggaatgaaatcatattctcaactttaa-nnnnnnnnatcacatttacgt |
199 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
45101997 |
gtctatatatcatatttgatagtgtcttgaataaaattatctctaataaaaggaatgaaatcatattctcaactttaatttttttttatcgcatttacgt |
45101898 |
T |
|
| Q |
200 |
atttggcacatttgctctcgtgggatcatg |
229 |
Q |
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|
|||||||||||||||||||||||||||||| |
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| T |
45101897 |
atttggcacatttgctctcgtgggatcatg |
45101868 |
T |
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